Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,373,957 – 6,374,047 |
Length | 90 |
Max. P | 0.712454 |
Location | 6,373,957 – 6,374,047 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 83.29 |
Mean single sequence MFE | -33.83 |
Consensus MFE | -24.17 |
Energy contribution | -24.82 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -2.19 |
Structure conservation index | 0.71 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6373957 90 + 20766785 AAGCGCAAAUUGCAGUCUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGGGGAUUCGUGUCGACACUCGUGGUUGCAC--------------CCCCCA ..(((((((.(((.......)))...))))))).......(((....((((((((.((....(((....))))).)))))))).--------------...))) ( -29.30) >DroPse_CAF1 17065 98 + 1 -CGAGCGGUUGGCAGUUAAAGAAUUUUUUGCGCAUCGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUUGUGGGUGCAG-----UAACCAUAGCACGCC -...((((.((((((..((....))..)))).)).)(..((((..((((((.((((((....(((....))))))))).)))))-----)..))))..).))). ( -31.40) >DroSec_CAF1 14613 90 + 1 AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUCGUGGGUGCAC--------------CCCCCA ..(((((((..((.((....))))..))))))).......(((....((((.((((((....(((....))))))))).)))).--------------...))) ( -31.20) >DroSim_CAF1 15049 90 + 1 AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUCGUGGGUGCAU--------------CCCCCA ..(((((((..((.((....))))..)))))))........(((...((((.((((((....(((....))))))))).)))))--------------)).... ( -31.30) >DroEre_CAF1 15991 102 + 1 AAGCGCAAAUUGCAGUUUAAGCGCUUUUUGCGCAUUGAAAUGGAAACUGCAGC-GCGUAUUCGUGUCGACACUCGUGGGUGCAUGAGUGCACCCAU-GCACCCA ..((((....((((((((..((((.....))))..........))))))))))-))......(((....)))...((((((((((.(....).)))-))))))) ( -40.50) >DroYak_CAF1 16090 103 + 1 AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUCAAAUGGAAACUGCAGCUGCGGAUUCGUGUCGACACUCGUGGGUGCAUGAGUGCACCCAU-GCACCCA ..(((((((..((.((....))))..)))))))......((((((.((((....)))).)))(((....))).)))(((((((((.(....).)))-)))))). ( -39.30) >consensus AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUCGUGGGUGCAU______________CACCCA ..(((((((.(((.......)))...)))))))........(....)((((.((((((....(((....))))))))).))))..................... (-24.17 = -24.82 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:32 2006