Locus 1682

Sequence ID 2R_DroMel_CAF1
Location 6,362,992 – 6,363,083
Length 91
Max. P 0.677927
window2805

overview

Window 5

Location 6,362,992 – 6,363,083
Length 91
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.80
Mean single sequence MFE -26.70
Consensus MFE -16.07
Energy contribution -16.27
Covariance contribution 0.19
Combinations/Pair 1.10
Mean z-score -2.57
Structure conservation index 0.60
SVM decision value 0.30
SVM RNA-class probability 0.677927
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6362992 91 + 20766785
AACU-UGCAGGAGUUCAAUAGCAUAGAA---ACAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCUGGGAGCC------CCG----AGGAGUG-
.(((-(...((.((((..((((......---.((........))....((((((((((((...)))))))))))))))).)))).------)).----..)))).- ( -24.40)
>DroVir_CAF1 6199 102 + 1
AACUUUGCAGGAGUUCAAUAGCAUAGAA---ACAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCCGCCAGCUGGA-CUGCUGGCCAGGAGGGU
.(((((.(.((.........((((....---..........))))..(((((((((((((...)))))))))))))))((((((....-..))))))..).))))) ( -31.54)
>DroGri_CAF1 10154 96 + 1
AACUUUGCAGGAGUUCAAUAGCAUAGAA---ACAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCUAUCAGCUGUG------GGGUGGGAGGG-
.((((..(((..........((((....---..........))))(((((((((((((((...))))))))))))...)))..)))..------)))).......- ( -24.84)
>DroEre_CAF1 4124 97 + 1
AACU-UGCAGGAGUUCAAUAGCAUAGAA---ACAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCUGCGAGCCCGAACCCCG----AGGAUGG-
..((-(((((..........((((....---..........))))..(((((((((((((...))))))))))))))))))))((((.....))----.))....- ( -26.74)
>DroWil_CAF1 8763 91 + 1
AACUCUGCAGGAGUUCAAUAGCAUAGAAAAAAUAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCUGCAA-CC-------AG----AGGAG---
..(((((.....((......))....................((((.(((((((((((((...))))))))))))).)))).-.)-------))----))...--- ( -23.70)
>DroAna_CAF1 4453 93 + 1
AACU-UGCAGGAGUUCAAUAGCAUAGAA---ACAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCCG----CCGCAAGGGGG----CGGAUGG-
...(-((((....(((............---...))).....))))).((((((((((((...))))))))))))(((.----((....)).))----)......- ( -28.96)
>consensus
AACU_UGCAGGAGUUCAAUAGCAUAGAA___ACAGAAAGAAAUGCGAUUUAUUUGCUAACCAGGUUGGCAAAUAAGCUGCCAGCCG_A____CG____AGGAGGG_
..((.(((............))).)).................(((.(((((((((((((...))))))))))))).))).......................... (-16.07 = -16.27 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:31 2006