| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,359,335 – 6,359,438 |
| Length | 103 |
| Max. P | 0.617484 |
| Location | 6,359,335 – 6,359,438 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.88 |
| Mean single sequence MFE | -39.77 |
| Consensus MFE | -25.75 |
| Energy contribution | -25.70 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6359335 103 + 20766785 GCCGGGCUGCGGGGCAGACCCAAAUCCUCGUCAGAGGCAUCGGGUCUGUUGCGUCGCUUGCGCAGGACAUCCGUGAGUUCCGCCUGAAAU-GGAUAUUUG----UAAU-- (((((((.(((.(((((((((....((((....))))....))))))))).))).))))).)).((....))(..(((((((.......)-))).)))..----)...-- ( -42.40) >DroPse_CAF1 4360 106 + 1 GCCGGACUGCGGGGCAGGCCCAGAUCCUCGUCGGAGGCAUCGGGUCGAUUGCGUCGCUUGCGUAGGACGUCUGUGAGCUCCGCCUUAAAU-GGAAAGCAAAGC-GAAA-- .(((....(((((((.(((((.(((((((....)))).)))))))).......((((..(((.....)))..)))))))))))......)-))..........-....-- ( -40.40) >DroGri_CAF1 6126 106 + 1 ACGGGACUUCGAGGCAGACCCAGGUCCUCAUCGGAGGCAUCGGGACGAUUUCGACGUUUUCGCAACACAUCUGUCAGCUCCGCCUGCAAUAGAUGAU-AA-GA-GAAAU- .((..((.((((((..(.(((.(((((((....)))).)))))).)..)))))).).)..)).....(((((((..((.......)).)))))))..-..-..-.....- ( -29.40) >DroYak_CAF1 358 103 + 1 GCCGGGCUGCGGGGCAGACCCAAAUCCUCGUCAGAGGCAUCGGGUCUGUUUCUUCGCUUACGCAGAACAUCCGUGAGUUCCGCCUGAAAU-GAGCAUUUA----UAAA-- ..(((((...(..((((((((....((((....))))....))))))))..)...(((((((.(.....).)))))))...)))))....-.........----....-- ( -39.30) >DroMoj_CAF1 6320 108 + 1 ACGGGGCUGCGCGGCAGGCCCAGAUCCUCGUCCGAGGCAUCGGGCCUAUUUCGACGCUUGCGCAGCACAUCUGUUAGCUCGGCCUGCCGAAGGAAAU-AA-CCGUUAUUA ((((.((((((((((((((((.(((((((....)))).)))))))))........)).))))))))............((((....)))).......-..-))))..... ( -46.70) >DroPer_CAF1 5167 106 + 1 GCCGGACUGCGGGGCAGGCCCAGAUCCUCGUCGGAGGCAUCGGGUCGAUUGCGUCGCUUGCGUAGGACGUCUGUGAGCUCCGCCUUAAAU-GGAAAGCAAAGC-GAAA-- .(((....(((((((.(((((.(((((((....)))).)))))))).......((((..(((.....)))..)))))))))))......)-))..........-....-- ( -40.40) >consensus GCCGGACUGCGGGGCAGACCCAGAUCCUCGUCGGAGGCAUCGGGUCGAUUGCGUCGCUUGCGCAGGACAUCUGUGAGCUCCGCCUGAAAU_GGAAAU_AA_GC_GAAA__ ...........((((.(((((.(((((((....)))).)))))))).........(((((((.........)))))))...))))......................... (-25.75 = -25.70 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:30 2006