Locus 1680

Sequence ID 2R_DroMel_CAF1
Location 6,356,803 – 6,356,907
Length 104
Max. P 0.858660
window2803

overview

Window 3

Location 6,356,803 – 6,356,907
Length 104
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 89.50
Mean single sequence MFE -27.23
Consensus MFE -21.04
Energy contribution -21.68
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.77
SVM decision value 0.82
SVM RNA-class probability 0.858660
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6356803 104 - 20766785
AGCUAUGGUAGUAGUAGUGAAGGAUUAGCCACUCCAGUUACUCCAGUCACUACACCAAGCACACC---------UAAAAGCAAUGGGUUUUCGAAAAGUAUUCUCAGUGCUCC
.(((.((((....(((((((.(((.((((.......)))).)))..)))))))))))))).....---------....((((.((((....(.....)....)))).)))).. ( -28.60)
>DroSec_CAF1 17059 104 - 1
AGCUAUGGAAGUAGUAGUGAAGGAUUAGCCACUCCAGUUACUCCAGCCACUACACCAAGCACACC---------UAAAAGCAAUGGGUUUUCGAAAAGUAUUCCCACUGCUCC
.(((.(((..(((((.((...(((.((((.......)))).))).)).))))).)))))).....---------....((((.((((....(.....)....)))).)))).. ( -28.20)
>DroSim_CAF1 19633 104 - 1
AGCUAUGGAAGUAGUAGUGAAGGAUUAGCCACUCCAGUUACUCCAGCCACUACACCAAGCACACC---------UAAAAGCAAUGGGUUUUCGAAAAGUAUUCCCAGUGCUCC
.(((.(((..(((((.((...(((.((((.......)))).))).)).))))).)))))).....---------....((((.((((....(.....)....)))).)))).. ( -28.20)
>DroEre_CAF1 17284 113 - 1
AGCUAUGGUAGUAGUAGUGAAGGAUUAGCCACUCCAGUUACUCCUGCCACUACACCAAACACACCUAAAACACCUAAAAGCAAUGGGUUUGCAAAGAUUCCUCCCAGUGCUCC
.....((((....((((((.((((.((((.......)))).))))..)))))))))).....................((((.((((...............)))).)))).. ( -27.26)
>DroYak_CAF1 17460 104 - 1
AGCUAUGGAAGUAGUAGUGAAGGAUUAUCCACUCCAGUUACUCCUGCCUCUACACCAAACACACC---------GAAAAGCAAUGGGUUUUCAAAGAGUAGCCCCAGUGCUCC
.....((((.((((.(((((.(((........)))..))))).)))).)))).............---------....((((..((((((((...))).)))))...)))).. ( -23.90)
>consensus
AGCUAUGGAAGUAGUAGUGAAGGAUUAGCCACUCCAGUUACUCCAGCCACUACACCAAGCACACC_________UAAAAGCAAUGGGUUUUCGAAAAGUAUUCCCAGUGCUCC
.(((.(((.....((((((..(((.((((.......)))).)))...)))))).))))))..................((((.((((...............)))).)))).. (-21.04 = -21.68 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:29 2006