Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,356,043 – 6,356,146 |
Length | 103 |
Max. P | 0.831693 |
Location | 6,356,043 – 6,356,146 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -34.31 |
Consensus MFE | -28.74 |
Energy contribution | -29.54 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.12 |
Mean z-score | -1.39 |
Structure conservation index | 0.84 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6356043 103 + 20766785 CCUUGCACUCCCAUUACCAUUGCUUAUAUUGUUAUUCAGGCUAUUGCGGCCCUGAUUGCUGGUCUUAAUGGGGGGCAGGUAGGUGACCACCUUGGGUGGCACC .(((((.((((((((((((..((............(((((((.....)).)))))..))))))...)))))))))))))..((((.(((((...))))))))) ( -40.14) >DroSec_CAF1 16302 103 + 1 CCUUGCACUCCCAUUACCAUUGCUGAUAUUGUUAUUCAGGCUAUUGCGGCCCUGAUUGCUGGUCUUAAUGGGGGGCAGGUAGUUGACCAGCUUUGGUGGCACC .(((((.(((((((((........(((...((...(((((((.....)).)))))..))..))).))))))))))))))..(((.(((......))))))... ( -31.90) >DroSim_CAF1 18879 100 + 1 CCUUGCACUCCCAUUACCAUUGCUGAUUUUGU-AUUC-GGUUAUUGCGGCCCUGAUUGCUGGUCU-AAGGGGGGGCAGGUAGUUGACCACCUUUGGUGGCACC .(((((.(((((...((((..(((((......-..))-)))....((((......))))))))..-...))))))))))....((.(((((...))))))).. ( -31.10) >DroEre_CAF1 16530 103 + 1 CCUGGCACUCCCAUUACUGUUGCUGAUAUUGUUAUUCAGGCUAUUGCGUCCCUGAUUGCUGGUCUUAAUGGGGGGCAGGUAGGUGACCACCUUUGGUGGCACC ((((.(.(((((((((........(((...((...(((((..........)))))..))..))).))))))))))))))..((((.(((((...))))))))) ( -36.90) >DroYak_CAF1 16712 103 + 1 CCUGGCACCCCCAUUACUGUUGCUGGUAUUGUUAUUUAGGCUAUUGCGUCCCUGAUUGCUGGUCUUAAUGGGAGGCAAGUAGGUGACCACCUUUGGUGGCACC .((.((.(.(((((((.....((..(((..((((...(.((....)).)...)))))))..))..))))))).))).))..((((.(((((...))))))))) ( -31.50) >consensus CCUUGCACUCCCAUUACCAUUGCUGAUAUUGUUAUUCAGGCUAUUGCGGCCCUGAUUGCUGGUCUUAAUGGGGGGCAGGUAGGUGACCACCUUUGGUGGCACC .(((((.((((((((((((..((............(((((..........)))))..))))))...)))))))))))))..((((.(((((...))))))))) (-28.74 = -29.54 + 0.80)
Location | 6,356,043 – 6,356,146 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -30.91 |
Consensus MFE | -24.10 |
Energy contribution | -25.74 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.86 |
Structure conservation index | 0.78 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6356043 103 - 20766785 GGUGCCACCCAAGGUGGUCACCUACCUGCCCCCCAUUAAGACCAGCAAUCAGGGCCGCAAUAGCCUGAAUAACAAUAUAAGCAAUGGUAAUGGGAGUGCAAGG (((((((((...))))).))))..((((((.((((((...((((((..(((((..........)))))(((....)))..))..)))))))))).).)).))) ( -34.90) >DroSec_CAF1 16302 103 - 1 GGUGCCACCAAAGCUGGUCAACUACCUGCCCCCCAUUAAGACCAGCAAUCAGGGCCGCAAUAGCCUGAAUAACAAUAUCAGCAAUGGUAAUGGGAGUGCAAGG .(..(..(((..(((((((....................)))))))..(((((..........))))).......(((((....))))).)))..)..).... ( -29.25) >DroSim_CAF1 18879 100 - 1 GGUGCCACCAAAGGUGGUCAACUACCUGCCCCCCCUU-AGACCAGCAAUCAGGGCCGCAAUAACC-GAAU-ACAAAAUCAGCAAUGGUAAUGGGAGUGCAAGG (((((((((...))))))..))).(((((.(.(((..-..((((((.....((..........))-((..-......)).))..))))...))).).)).))) ( -25.40) >DroEre_CAF1 16530 103 - 1 GGUGCCACCAAAGGUGGUCACCUACCUGCCCCCCAUUAAGACCAGCAAUCAGGGACGCAAUAGCCUGAAUAACAAUAUCAGCAACAGUAAUGGGAGUGCCAGG (((((((((...))))).))))..((((((.(((((((......((..(((((..........)))))(((....)))..)).....))))))).).).)))) ( -32.80) >DroYak_CAF1 16712 103 - 1 GGUGCCACCAAAGGUGGUCACCUACUUGCCUCCCAUUAAGACCAGCAAUCAGGGACGCAAUAGCCUAAAUAACAAUACCAGCAACAGUAAUGGGGGUGCCAGG (((((((((...))))).))))..((.(((((((((((...((........))...((....)).......................))))))))).)).)). ( -32.20) >consensus GGUGCCACCAAAGGUGGUCACCUACCUGCCCCCCAUUAAGACCAGCAAUCAGGGCCGCAAUAGCCUGAAUAACAAUAUCAGCAAUGGUAAUGGGAGUGCAAGG (((((((((...))))).))))..((((((.(((((((......((..(((((..........)))))(((....)))..)).....))))))).).)).))) (-24.10 = -25.74 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:28 2006