Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,355,553 – 6,355,645 |
Length | 92 |
Max. P | 0.999231 |
Location | 6,355,553 – 6,355,645 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.87 |
Mean single sequence MFE | -30.79 |
Consensus MFE | -30.67 |
Energy contribution | -30.43 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.15 |
Mean z-score | -1.92 |
Structure conservation index | 1.00 |
SVM decision value | 3.45 |
SVM RNA-class probability | 0.999231 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6355553 92 - 20766785 CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGCUCGAUUCCGGUGCCC .................................(((((((((((.(((.(((((................)))))))).)..)))))))))) ( -29.39) >DroSec_CAF1 15812 92 - 1 CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGUUCGGGUCCGGUGCCC .................................((((((((((((.(..(((((................)))))...).)))))))))))) ( -32.29) >DroSim_CAF1 18380 92 - 1 CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGUUCGGGUCCGGUGCCC .................................((((((((((((.(..(((((................)))))...).)))))))))))) ( -32.29) >DroEre_CAF1 16020 92 - 1 CCUGUAAAGAAUCGCAAAUGAAAUGAAAGUUGAGGGCGCCGGACUGGCAAGGUCAUCCAAAGACAAUAACGACCAGCUCGGGUUCGGUGCCC .................................(((((((((((((((..((((................)))).)))..)))))))))))) ( -28.59) >DroYak_CAF1 16203 92 - 1 CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAACGACCUGCUCGGGUUCGGUGCCC .................................(((((((((((((((.(((((................))))))))..)))))))))))) ( -31.39) >consensus CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGCUCGGGUCCGGUGCCC .................................(((((((((((((((.(((((................))))))))..)))))))))))) (-30.67 = -30.43 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:26 2006