Locus 1677

Sequence ID 2R_DroMel_CAF1
Location 6,354,447 – 6,354,546
Length 99
Max. P 0.645631
window2799

overview

Window 9

Location 6,354,447 – 6,354,546
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.00
Mean single sequence MFE -23.15
Consensus MFE -15.07
Energy contribution -15.57
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.65
SVM decision value 0.23
SVM RNA-class probability 0.645631
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6354447 99 - 20766785
AA--ACACUUCUAAACUGGAUGAAACCUAUCUCACAGACCUCCUUCCAUUGCAGGUUAAGGGCAAGAAACCGUACAUUGACCGCAAGAAGGCGGUCACCUU
..--.............(((((.....)))))....((((.(((((..((((.((((((..((........))...))))))))))))))).))))..... ( -27.10)
>DroSec_CAF1 14686 99 - 1
AA--ACACUUCUAAACUGGGUGAAACCUAUCUCACAGGCCAUCUUCCAUUGCAGGUUAAGGGCAAGAAGCCGUACAUUGACCGCAAAAAGGCGGUCACCUU
..--((.(((((.......((((........))))..(((.....((......)).....))).)))))..))....(((((((......))))))).... ( -26.80)
>DroSim_CAF1 17276 99 - 1
AA--ACACCUCUAAACUGGAUGAAACUUAUCUCACAGGCCAUCCUCCAUUGCAGGUUAAAGGCAAGAAGCCGUACAUUGACCGCAAAAAGGCGGUCACCUU
..--((((((.(((...(((((...((........))..)))))....))).))))....(((.....)))))....(((((((......))))))).... ( -25.90)
>DroEre_CAF1 14908 99 - 1
AA--ACACUCCUAAACUGACUAAAACCCAUCUCAAAGGCAAUCUUCCAUGGCAGGUUAAGGGCAAGAAGCCGUACAUUGACCGCAAGAAGGCGGUCACCUU
..--..............................((((.(((((.(....).)))))...(((.....)))......(((((((......))))))))))) ( -20.90)
>DroYak_CAF1 15052 99 - 1
AA--ACACGUUUAAACUGGGUAAAACCUAUUUUAAAGGCACUAUUCCAUUGCAGGUUAAGGGCAAGAAGCCGUACAUUGACCGCAAGAAGGCGGUCACCUU
..--...(.((((((.((((.....)))).)))))).)..............((((....(((.....))).......((((((......)))))))))). ( -26.30)
>DroAna_CAF1 15150 95 - 1
AACAACACAUUU----UGGAGAACACCCACUGUAA--UUCUUAUUUAAUUUAAGGGCAAAGGCAAAAAACCCUAUAUUGACCGCAAAAAAGCCGUCACCUU
......(((...----(((.......))).)))..--..............((((....(((........)))....((((.((......)).)))))))) ( -11.90)
>consensus
AA__ACACUUCUAAACUGGAUAAAACCUAUCUCAAAGGCCAUCUUCCAUUGCAGGUUAAGGGCAAGAAGCCGUACAUUGACCGCAAAAAGGCGGUCACCUU
....................................................(((.....(((.....)))......(((((((......)))))))))). (-15.07 = -15.57 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:25 2006