Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,350,468 – 6,350,561 |
Length | 93 |
Max. P | 0.567787 |
Location | 6,350,468 – 6,350,561 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -19.76 |
Energy contribution | -19.82 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.78 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6350468 93 - 20766785 UUGACCGCCGGCGGAGCUCAUCCUCCUCCUCCUCCUCUUCAUCCGCUCCAGCUCCUUGCGACCCUUCCGCAUCCAUGUGUACAGUGGAGUCUA ..(((....((.((((......)))).))............((((((...((....((((.......)))).....))....))))))))).. ( -23.20) >DroSec_CAF1 10771 90 - 1 UUGACCGCCGGCGGAGCUCCUCC---UCCUCCUUCUCCUCAUCCGCUCCAGCUCCUUGCGACCCUUCCGCGUCUAUGUGUACAGUGGAGGCUC ......(((((.((((......)---))).)).........((((((...((....((((.......)))).....))....))))))))).. ( -25.80) >DroSim_CAF1 11385 84 - 1 UUGACCGCCGGCGGAGCUCCUCC---UCCU------CUCCAUCCGCUCCAGCUUCUUGCGACCCUUCCGCGUCUAUGUGUAUAGUGGAGGCUA ......(((((.((((...))))---.)).------.....((((((...((....((((.......)))).....))....))))))))).. ( -24.80) >DroEre_CAF1 10890 78 - 1 UUGACCGCCGGCGGAGCUC---------------CUCCUCCGCCGCUCCAGCUCCUCGCGACCCUUCCGCGUCCAUACGUACAGUGGAAGCUC .....(((.(((((((...---------------...)))))))((....)).....)))...(((((((((.(....).)).)))))))... ( -27.80) >consensus UUGACCGCCGGCGGAGCUCCUCC___UCCU____CUCCUCAUCCGCUCCAGCUCCUUGCGACCCUUCCGCGUCCAUGUGUACAGUGGAGGCUA .....(((.((((((((...........................))))).)))....)))...(((((((.............)))))))... (-19.76 = -19.82 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:24 2006