Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,344,514 – 6,344,616 |
Length | 102 |
Max. P | 0.743187 |
Location | 6,344,514 – 6,344,616 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -20.32 |
Energy contribution | -20.43 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.13 |
Mean z-score | -1.63 |
Structure conservation index | 0.72 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.743187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6344514 102 - 20766785 UUCUUUGUGUUUGUGCUCCUGUACUGGCCGAUACUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGCUCCAGACUGCAUAUGUCUGGACUCCGUUAAAAAGUC------------------ ..((((......((((....))))...((((..(((..((((....)))).)))...))))((((.(((((((.......))))))))))).....))))..------------------ ( -30.00) >DroVir_CAF1 5299 102 - 1 UUUUUUGUGUUCGUGCUACUAUAUUGGCCCAUAUUGCUGAUGAAAUCGUCCUAGGAUUUGGGGAGUUCCAGAAUACACUUUUCUGGACUCCGUUAAAAAUUC------------------ .((((((.......((((......))))(((.(((...((((....))))....))).)))(((((.((((((.......)))))))))))..))))))...------------------ ( -24.80) >DroGri_CAF1 5267 120 - 1 UUCUUUGUGUUUGUACUGUUGUAUUGGCCCAUAUUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGCUCCAGGAUACACAUUUCUGGACUCCGUUAAAAAUCUCAGAAGCAAAAAAAAUAA .....((.((..((((....))))..)).))..(((((((((....))))((..((((((.((((.(((((((.......))))))))))).)...)))))..)).)))))......... ( -32.70) >DroWil_CAF1 4650 102 - 1 UUUUUCGUUUUCGUACUUCUGUAUUGGCCUAUUUUGCUCAUGAAGUCCUCCUAGGAUUUGGGGAGUUCAAGACUUCACAUGUCUGGACUCCGUUAAAAAAAU------------------ ............((((....))))((((............(.((((((.....)))))).)((((((((.(((.......))))))))))))))).......------------------ ( -23.50) >DroMoj_CAF1 5188 102 - 1 UUCUUCGUCUUUGUCCUGCUGUAUUGGCCCAUCUUACUGAUGAAGUCCUCCUAGGAUUUGGGGAGUUCCAGAAUACACUUUUCUGGACUCCGUUAAAAAAUC------------------ ........((..((((((((.....))).((((.....))))..........)))))..))(((((.((((((.......)))))))))))...........------------------ ( -28.50) >DroAna_CAF1 4771 102 - 1 UUCUUUGUGUUCGUCCUCCUGUACUGGCCGAUCCUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGUUCCAGAAUACACAUUUCUGGACUCCGUUAAAAAACC------------------ .................((......))(((((((((..((((....)))).))))).))))(((((.((((((.......)))))))))))...........------------------ ( -29.00) >consensus UUCUUUGUGUUCGUACUCCUGUAUUGGCCCAUAUUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGUUCCAGAAUACACAUUUCUGGACUCCGUUAAAAAAUC__________________ .....................(((((((.......)))))))(((((.......)))))..((((.(((((((.......)))))))))))............................. (-20.32 = -20.43 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:23 2006