Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,335,323 – 6,335,413 |
Length | 90 |
Max. P | 0.649852 |
Location | 6,335,323 – 6,335,413 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -15.56 |
Energy contribution | -16.20 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.31 |
Mean z-score | -1.85 |
Structure conservation index | 0.60 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6335323 90 + 20766785 CUAGCCGUGUAUGCGCAUGUAUGUGUGCCU--------CACGUAAUGGCGUACCACGUAGUAAUUGUCAUUACAAAUAGAAGUGGGAGUUACCAAAAG .....(((((((((.(((.((((((.....--------)))))))))))))).))))..((((((.(((((.(.....).))))).))))))...... ( -25.80) >DroSec_CAF1 5400 90 + 1 CUGGCCGUGUAUGCGCAUGUGUGUGUGCCU--------CACGUAAUGGCGUACCACGUAGUAAUUGUCAUUACAAACAGAAGUGGGAGUUACCAAAAA (((...(((...((((((....))))))..--------)))((((((((.(((......)))...))))))))...)))...(((......))).... ( -26.40) >DroSim_CAF1 5407 90 + 1 CUGGCCGUGUAUGCGCAUGUGUGUGUGCCU--------CACGUAAUGGUGUACCACGUAGUAAUUGUCAUUACAAACAAAAGUGGGAGUUACCAAAAA .....((((...((((((....))))))..--------))))...(((((..((((.......((((....))))......))))....))))).... ( -23.52) >DroEre_CAF1 5383 90 + 1 CUGAACGUGUAUGCGCCUGUGUGUGUGCCU--------CACGCAAUGGCGUACCACGUAGUAAUUGCUAUUACAAACAGAAGUGGGAGUUACCAAAAA ....(((((..((((((..((((((.....--------))))))..)))))).))))).((((((.(((((.(.....).))))).))))))...... ( -31.40) >DroYak_CAF1 5352 90 + 1 CUAGACGUGUAUGCGCAUGUGUGUGUGUCU--------CCCGUAAUGGCGUACCACGUAGUAAUUGCCAUUACAAAUAAAUGUGGGAGUUACCAAAAA ....((((((....)))))).((.(((.((--------(((((((((((.(((......)))...))))))))..((....))))))).))))).... ( -27.20) >DroPer_CAF1 632 92 + 1 -----CAAGUGUUUGCUUGUAUGUGUCCCAUGUACGAGUACGUAAUGGCGUAC-ACGUAGUAAUUACAAUUUCAAAUCAAAAUACUCGUUUGUAAAAC -----..((((((((((((((((((...)))))))))))..(((((.(((...-.)))....)))))............)))))))............ ( -20.60) >consensus CUGGCCGUGUAUGCGCAUGUGUGUGUGCCU________CACGUAAUGGCGUACCACGUAGUAAUUGCCAUUACAAACAAAAGUGGGAGUUACCAAAAA .....((((..(((((...((((((.............))))))...))))).))))..((((((.(((((.........))))).))))))...... (-15.56 = -16.20 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:20 2006