Locus 1670

Sequence ID 2R_DroMel_CAF1
Location 6,324,448 – 6,324,541
Length 93
Max. P 0.987145
window2788

overview

Window 8

Location 6,324,448 – 6,324,541
Length 93
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 74.44
Mean single sequence MFE -13.17
Consensus MFE -10.56
Energy contribution -10.72
Covariance contribution 0.16
Combinations/Pair 1.29
Mean z-score -1.76
Structure conservation index 0.80
SVM decision value 2.07
SVM RNA-class probability 0.987145
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6324448 93 + 20766785
ACAAAUGUCUUUAAAGAGACUCGUACCAUAUC---UGGCGUAUGGUACCCGUACCCAGUCCAAAUAAAAA--AAA--A-CUUCAAAACCCAGUAAAAAAAA
......(((((....)))))...........(---(((.((((((...))))))))))............--...--.-...................... ( -15.80)
>DroSec_CAF1 74560 95 + 1
ACAAAUGUCUUUAAAGAGAUUCGUACCAUAUC---UGGCGUAUGGUGCCCAUACCCAGCCCAAAUAAAAA--AAAAAACUUUCAAAAACCCGUAAAC-AAA
((.(((.(((....))).))).)).......(---(((.((((((...))))))))))............--.........................-... ( -14.70)
>DroSim_CAF1 52163 97 + 1
ACAAAUGUCUUUAAAGAGAUUCGUACCAUAUC---UGGCGUAUGGUGCCCAUACCCAGCCCAAAUAAAAAAAAAAAAACUUUCAAAAACCCGUAAAC-AAA
((.(((.(((....))).))).)).......(---(((.((((((...)))))))))).......................................-... ( -14.70)
>DroEre_CAF1 69718 95 + 1
ACAAAUGUCUUCAAAGAGACUCGAACCAUAUC---UGACGUAUGGUACCCGUACCCAGCCUUAAUUAAAA--AAAAAAAUUUCAAAAACCCUAAAAC-GAA
......(((((....)))))(((.(((((((.---....)))))))....((.....))...........--........................)-)). ( -10.90)
>DroAna_CAF1 69349 84 + 1
AAAAAUGUCUU-AAAAAGACUCUCGGCAUAUCUUUUGACGUAUGGAGCCUUUCCAGAACCGAAAACUAUU--GAAAAACUCCCAA-----------C-A--
....(((((..-.((((((...........)))))))))))..((((..((((.................--))))..))))...-----------.-.-- (  -9.73)
>consensus
ACAAAUGUCUUUAAAGAGACUCGUACCAUAUC___UGGCGUAUGGUGCCCAUACCCAGCCCAAAUAAAAA__AAAAAACUUUCAAAAACCCGUAAAC_AAA
......(((((....)))))..(((((((((........)))))))))..................................................... (-10.56 = -10.72 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:15 2006