Locus 1667

Sequence ID 2R_DroMel_CAF1
Location 6,311,579 – 6,311,679
Length 100
Max. P 0.671678
window2785

overview

Window 5

Location 6,311,579 – 6,311,679
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.37
Mean single sequence MFE -30.20
Consensus MFE -18.97
Energy contribution -19.78
Covariance contribution 0.81
Combinations/Pair 1.32
Mean z-score -1.70
Structure conservation index 0.63
SVM decision value 0.29
SVM RNA-class probability 0.671678
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6311579 100 - 20766785
AGUCAUAAUGGGAAACAGCUGAUAGUACACGCCCCCUCACAUCGUCCCCUAAUCGAGCCCUUU--UCUCCAGGGACACAAACAGAGGGCGGAG--CGGCCAUAA
.......((((....).((((........(((((.((......(((((......(((......--.)))..)))))......)).)))))...--))))))).. ( -24.00)
>DroPse_CAF1 46376 87 - 1
AGUCAUAAUGGGCAACAGCUGAUAACACACGCCCCCCCACAA--C------------CUCUUUAUUCUUC-GAGAGAGAG--AGAGGCGGAAACGGGGCUAUAA
.......((.(((....))).)).......(((((.......--(------------((((((.(((((.-..)))))))--))))).(....))))))..... ( -26.90)
>DroSec_CAF1 61775 99 - 1
AGUCAUAAUGGGAAACAGCUGAUAGUACACGCCCCCGCCCAUCGCCCCU-AAUCGAGCCCUUU--UCUCCAGGGACACAAACAGGGGGCGGAA--CGGCCAUAA
.(((....((((.....((((......)).)).....))))((((((((-.......((((..--.....)))).........))))))))..--.)))..... ( -28.79)
>DroSim_CAF1 38648 100 - 1
AGUCAUAAUGGGAAACAGCUGAUAGUACAAGCCCCCGCCCAUCGCCCCCAAAUCGAGCCCUUU--UCUCCAGGGACACAAACAGGGGGCGGAA--CGGCCAUAA
.(((....((((.....(((.........))).....))))((((((((........((((..--.....)))).........))))))))..--.)))..... ( -32.13)
>DroEre_CAF1 56865 99 - 1
AGUCAUAAUGGGAAACAGCUGAUAGUACACGCCCCCUCCCACCGCCCCCUAAUCGAGCCC-UU--UCUCCAGGGACACAGAAAGGGGGCGGGG--CGGCCAUAA
.(((....(((((....((((......)).))....)))))(((((((((..((...(((-(.--.....)))).....)).)))))))))))--)........ ( -37.90)
>DroYak_CAF1 83251 99 - 1
AGUCAUAAUGGAAAACAGCUGAUAGUACACGCCCCCUUCCACUGCCCCCUAAUCGAGCCU-UU--UCUCUGGGGACACAAACAGGGGGCGGGG--CAGCCAUAA
.(((....(((((....((((......)).))....)))))(((((((((....(((...-..--.)))((....)).....)))))))))))--)........ ( -31.50)
>consensus
AGUCAUAAUGGGAAACAGCUGAUAGUACACGCCCCCUCCCAUCGCCCCCUAAUCGAGCCCUUU__UCUCCAGGGACACAAACAGGGGGCGGAA__CGGCCAUAA
.(((....((((.....((((......)).)).....))))((((((((........(((...........))).........)))))))).....)))..... (-18.97 = -19.78 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:12 2006