Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,300,338 – 6,300,436 |
Length | 98 |
Max. P | 0.547748 |
Location | 6,300,338 – 6,300,436 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -28.71 |
Consensus MFE | -23.05 |
Energy contribution | -22.62 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.40 |
Structure conservation index | 0.80 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6300338 98 + 20766785 GGACUGUGAAAAACGGAUGGGCAAGUGGAAAGGGAAAUGGCAGAAGGAUGAUGGC------GAGGACGAGGACGAACCCACUGCCAGUCUGUUUGCUCCUGUCA .(((.(.((.((((((((.((((.((((.........((.((.........)).)------)....((....))...)))))))).))))))))..))).))). ( -27.80) >DroSec_CAF1 42802 92 + 1 GGACUGUGAAAAACGGAUGGGCAAGUGGAAAUGGCAAUGGAA--------AUGGC----AGGAGGGCGAGGACGAACCCACUGCCAGUCUGUUUGCUCCUGUCA .(((.(.((.((((((((.((((.((((.....((.((....--------)).))----....(..((....))..))))))))).))))))))..))).))). ( -30.60) >DroEre_CAF1 42964 104 + 1 GGACUGUGAAAAGCGGAUGGGCAAGUGGAAAUGGAAAUGGCAGGAGGACGAGGACAGGGAUGAUGACGAGGAGGAACCCACUGUCCCUCUGUUUGCUCCAGUCA .(((((.((.(((((((.(((((.((((............((...(..(........)..)..))............))))))))).)))))))..))))))). ( -29.75) >DroYak_CAF1 46767 91 + 1 GGACUGUGAAAAAUGGACGGGCAAGUGGAAAUAAAAAUGGCAGGAGGACGG-------------GACGAAGAGGAACCCACUGCCAGUCUGUUUGCUCCUGUCA ...............((((((((((..((........((((((..((.(..-------------........)...))..)))))).))..))))).)).))). ( -26.70) >consensus GGACUGUGAAAAACGGAUGGGCAAGUGGAAAUGGAAAUGGCAGGAGGACGAUGGC______GAGGACGAGGACGAACCCACUGCCAGUCUGUUUGCUCCUGUCA .(((.(.((.((((((((.((((.((((.................................................)))))))).))))))))..))).))). (-23.05 = -22.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:11 2006