Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,292,908 – 6,293,010 |
Length | 102 |
Max. P | 0.964912 |
Location | 6,292,908 – 6,293,010 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 69.67 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -12.56 |
Energy contribution | -13.30 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.26 |
Mean z-score | -2.38 |
Structure conservation index | 0.46 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6292908 102 + 20766785 AACAGCCCCCCCCCC-CC-UUUACCGGCAAUACCCCCACUACCGCAUGUGGUUGGUGGGGGUAAAA-UAAUACGGAUUCAACAUCUCAAAUUGAAAAGCCAG--CAG ...............-..-......(((..((((((((((((((....))).)))))))))))...-.........(((((.........)))))..)))..--... ( -30.30) >DroSec_CAF1 35351 88 + 1 AAAAGCCACCCCCAC-CCCCC---------UACC--------CCCUUGUGGUAAGCGGGGGUAAAA-UAAUACGGAUUCAACGUCUCAAAUUGAAAAGCCAGCGCAG ....(((......((-(((((---------((((--------.......))).)).))))))....-......((.(((((.........)))))...)).).)).. ( -20.50) >DroEre_CAF1 36046 84 + 1 UCUGG--ACCCCAAUACCGCA---------CACC--------GCCAUGUGGU--GUUGGGGUAAAUUUAAUACGGAAUCGGCGUCUCGAAUUGAAAAGCCAG--CAG .((((--((((((((((((((---------....--------....))))))--))))))))...((((((.((..((....))..)).))))))...))))--... ( -32.90) >DroYak_CAF1 38860 81 + 1 UCUGG--ACCCCAAUGCCGCA---------CACC--------GCCAUGUGG----UUGGGGUAAAA-UAAUACGGAAUCGACGUCUCGAAUUGAAAAGCCAG--CAG .((((--((((((..((((((---------....--------....)))))----)))))))....-..........((((....)))).........))))--... ( -24.40) >consensus AAUAG__ACCCCAAC_CCGCA_________CACC________CCCAUGUGGU__GUGGGGGUAAAA_UAAUACGGAAUCAACGUCUCAAAUUGAAAAGCCAG__CAG .......((((((((.((((...........................))))...))))))))...........((.(((((.........)))))...))....... (-12.56 = -13.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:10 2006