Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,283,073 – 6,283,191 |
Length | 118 |
Max. P | 0.500000 |
Location | 6,283,073 – 6,283,191 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -22.44 |
Energy contribution | -21.00 |
Covariance contribution | -1.44 |
Combinations/Pair | 1.22 |
Mean z-score | -1.67 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6283073 118 + 20766785 GACAUUUAAUUUGAACACCCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUCAUAAUUUAGUUGUGGUUUACUCAAACAAUAUUCAACAAUGUUUACC ((((((....((((((.(((.....))).))))))(((((((((......)))))))))(.((((......((((((...))))))((((....))))....)))).))))))).... ( -26.20) >DroSec_CAF1 25626 115 + 1 GACAUUUAAUUUGAA---CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAAAUCCGUUUGCUGAAAGCAUUCAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUUAACAAUGUUUACC ...........((((---(((.(((..(((((...(((((((((......)))))))))((.....))......))))).))).)))))))...(((((.((.....)).)))))... ( -26.20) >DroEre_CAF1 25469 115 + 1 GACAUUUAAUUUGAA---CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUUAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUCGGCAAUGUUUACC ((((((.....((((---(((.(((..(((((((((((((((((......)))))))))((.....))..))).))))).))).))))))).((((((...)))))).)))))).... ( -29.20) >DroYak_CAF1 28915 115 + 1 GACAUUUAAUUUGAA---CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUUAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUCAGCAGUGUUUACC ((((((.....((((---(((.(((..(((((((((((((((((......)))))))))((.....))..))).))))).))).)))))))...((((...))))...)))))).... ( -27.20) >consensus GACAUUUAAUUUGAA___CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUCAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUCAACAAUGUUUACC ((((((...............(((((....((((.(((((((((......)))))))))..))))..)))))........((((..((((....))))......)))))))))).... (-22.44 = -21.00 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:07 2006