Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,280,062 – 6,280,159 |
Length | 97 |
Max. P | 0.736353 |
Location | 6,280,062 – 6,280,159 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.95 |
Mean single sequence MFE | -23.38 |
Consensus MFE | -9.01 |
Energy contribution | -9.83 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.27 |
Mean z-score | -3.05 |
Structure conservation index | 0.39 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6280062 97 - 20766785 AAACGUGUG------UGGAUUUAUUUGAAAAUGUACAAAAAUACAAUUGUCAAAU-AAAUUGUAUAAUCUCGAAAUGGGUUGUACUAUUCUAUUCUUUGCAUUU ....((((.------..(((((((((((...((((......))))....))))))-)))))(((((((((......))))))))).............)))).. ( -20.10) >DroSec_CAF1 22756 85 - 1 AAACGUGUG------UGGAUUUAUUUGAAAAUGCACAAAAGUGCAAUAGUCAAAUCAAAUUGUAUAAUCUCGAAAUGGAG------AU-------UAUACAUUU .........------..(((((((((((...(((((....)))))....)))))).)))))((((((((((......)))------))-------))))).... ( -25.10) >DroEre_CAF1 22581 103 - 1 AAACGUGUGCUAGUGUGGAUUUAUUUGAAAUUGUAUGCAAGUGCAAUUGUCAAAU-AAAUUGUAUAAACUCGAAAUGAGGUGUACAAUUCUAUGCUUUGCAUUU ......((((.(((((((((((((((((((((((((....)))))))).))))))-)))(((((((..(((.....))).))))))).))))))))..)))).. ( -31.50) >DroYak_CAF1 24232 95 - 1 AAACGUGUG--------UGUUUAUUUGGAAUUGUAUAAAAGUCCAAUUGUCAAAU-AAAUUGUAUGAGCUCGAAGUAAGGUGUAAAAUUCUAUUCUUUGCAUUU ...((((..--------.(((((((((((((((.((....)).))))).))))))-))))..))))........((((((.(((......))).)))))).... ( -16.80) >consensus AAACGUGUG______UGGAUUUAUUUGAAAAUGUACAAAAGUGCAAUUGUCAAAU_AAAUUGUAUAAUCUCGAAAUGAGGUGUACAAUUCUAUUCUUUGCAUUU ....((((.........(((((((((((((((((((....)))))))).)))))).))))).......(((.....)))...................)))).. ( -9.01 = -9.83 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:01 2006