Locus 1660

Sequence ID 2R_DroMel_CAF1
Location 6,276,737 – 6,276,840
Length 103
Max. P 0.994735
window2773

overview

Window 3

Location 6,276,737 – 6,276,840
Length 103
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 94.10
Mean single sequence MFE -28.36
Consensus MFE -25.16
Energy contribution -24.76
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.98
Structure conservation index 0.89
SVM decision value 2.51
SVM RNA-class probability 0.994735
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6276737 103 + 20766785
AGUUGGCUGACAGCU-----UUUCCAUCGAUUAUCGACGAAGCCAAGAAAAGUCAGGGACACAAGUCACCGAUUCAUUUAUCAAGUUUCAACGAUGAUACGUUUUGGA
(((((.....)))))-----..((((.(((((((((..(((((............(((((....))).))(((......)))..)))))..))))))).))...)))) ( -27.80)
>DroSec_CAF1 19534 103 + 1
AGUUGGCAGACAGCU-----UUUCCAUCGAUUAUCGACGAAGCCAAGAAAAGUCAGGGACACAAGUCACCGAUUCAUUUAUCAAGUUUCAACGAUGAUACGUUUUGGA
(((((.....)))))-----..((((.(((((((((..(((((............(((((....))).))(((......)))..)))))..))))))).))...)))) ( -27.80)
>DroSim_CAF1 19979 103 + 1
AGUUGGCUGACAGCU-----UUUCCAUCGAUUAUCGACGAAGCCAAGAAAAGUCAGGGACACAAGUCACCGAUUCAUUUAUCAAGUUUCAACGAUGAUACGUUUUGGA
(((((.....)))))-----..((((.(((((((((..(((((............(((((....))).))(((......)))..)))))..))))))).))...)))) ( -27.80)
>DroEre_CAF1 19285 108 + 1
AGUUGUCUGACAGCUUUGCUUUUCCAUCGAUUAUCGAGGAAGCCAAGAAAAGUCAGGGACACAAGUCGUUGAUUCAUUUAUCAAGUUUCAACGAUGAUACGUUUUGGC
.(((.((((((..(((.(((..(((.(((.....))))))))).)))....)))))))))....((((((((..(.........)..))))))))............. ( -28.80)
>DroYak_CAF1 20807 103 + 1
AGUUGUCCGACAGCU-----UUUCCAUCGAUUAUCGAAGAAGCCAAGAAAAGUCAGGGACACAAGUCGCUGAUUCAUUUAUCAAGUUUCAACGAUGAUACGUUUUGGC
(((((.....)))))-----...(((.(((((((((..(((((....(((((((((.(((....))).))))))..))).....)))))..))))))).))...))). ( -29.60)
>consensus
AGUUGGCUGACAGCU_____UUUCCAUCGAUUAUCGACGAAGCCAAGAAAAGUCAGGGACACAAGUCACCGAUUCAUUUAUCAAGUUUCAACGAUGAUACGUUUUGGA
(((((.....)))))........(((.(((((((((..(((((............(((((....))).))(((......)))..)))))..))))))).))...))). (-25.16 = -24.76 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:00 2006