Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,266,698 – 6,266,796 |
Length | 98 |
Max. P | 0.600088 |
Location | 6,266,698 – 6,266,796 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 87.98 |
Mean single sequence MFE | -31.21 |
Consensus MFE | -24.60 |
Energy contribution | -26.10 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.26 |
Structure conservation index | 0.79 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6266698 98 - 20766785 AAUUGAGCUGCU---------CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC .....((((...---------.))))((((((((((((((.(((((((.((.......(((....))).......))))))))).).)))).......))))))))) ( -34.05) >DroSec_CAF1 9785 98 - 1 AAUUGAGCUGCU---------CGGUUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC (((((((...))---------)))))((((((((((((((.(((((((.((.......(((....))).......))))))))).).)))).......))))))))) ( -33.45) >DroSim_CAF1 9991 98 - 1 AAUUGAGCUGCU---------CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC .....((((...---------.))))((((((((((((((.(((((((.((.......(((....))).......))))))))).).)))).......))))))))) ( -34.05) >DroEre_CAF1 9452 97 - 1 AAUUGAGCUGCU---------CGGCUGCUGCUCCUGCUGCCUU-UCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGGAACAGGAACAGC ......((((..---------.((((((.((....)).)).((-((((.((.......(((....))).......)))))))).))))..((((...))))..)))) ( -27.74) >DroYak_CAF1 10628 98 - 1 AAUUGAGCUGCU---------CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACGAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAAGAACAGC .....((((...---------.))))(((((((..(((((.(((((((.((.......(((....))).......))))))))).).)))).........))))))) ( -28.14) >DroAna_CAF1 8682 101 - 1 AAUUGAGCUGCAGUGCUGGCCUGGCUGUCGUUUCUGCAGC------UGCUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAGAGCGCAUCUGAAACUCGACCAGC ..(((((...(((((((((((.((((((.......)))))------)...)))))...(((....)))...................))).)))...)))))..... ( -29.80) >consensus AAUUGAGCUGCU_________CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC .....(((((...........)))))((((((((((((((.(((((((.((.......(((....))).......))))))))).)).))).......))))))))) (-24.60 = -26.10 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:59 2006