Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,259,087 – 6,259,184 |
Length | 97 |
Max. P | 0.530532 |
Location | 6,259,087 – 6,259,184 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 81.24 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -21.12 |
Energy contribution | -21.88 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.12 |
Mean z-score | -1.60 |
Structure conservation index | 0.62 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6259087 97 - 20766785 UACACAGAGU----GUGGU--CCACAAAGG-AA----CGUCGGGAUGUGCCUGUA--GCAUUCGGUUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC .((((...))----))(((--((((((...-.(----(((....))))(((((((--((....(((((.....)))))...))))))))).......)))))).)))... ( -35.20) >DroSec_CAF1 2323 97 - 1 UACACAGAGU----GUGGU--CCACAAAGG-AA----CGCCGGGAUGUGCCAGUA--GCAUUCGGUUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC ......((.(----(((((--((.....))-).----.(((((.((((.......--)))))))))....))))).))...((((...(((((......)))))..)))) ( -31.70) >DroSim_CAF1 2307 97 - 1 UACACAGAGU----GUGGU--CCACAAAGG-AA----CGCCGGGAUGUGCCAGUA--GCAUUCGGCUGCACCACAAUCCAGGCUGCACGCCACUAAAUUGUGGCACCAGC ........((----(((.(--((.....))-).----)(((.(((((((...(((--((.....)))))..))).)))).))).))))(((((......)))))...... ( -36.00) >DroEre_CAF1 2291 86 - 1 UACACCGAGU----GU-------ACAAGGAAAA----GGCCGGGAUGUGCCAGUA--G-------CUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC (((((...))----))-------)...((....----((((.((((((((.....--.-------..))))....)))).))))....(((((......))))).))... ( -28.10) >DroYak_CAF1 3039 97 - 1 UACACAGAGU----UUGGC--CCACAAAGG-AA----CGCCGGGAAGUGCCAGUA--GCUCUCAGCUGCACCACAAUCCGGGCUGCAGGCCACUAAAUUGUGGCACCAGC ..........----..(..--((.....))-..----).(((((..(((...(((--((.....)))))..)))..)))))((((...(((((......)))))..)))) ( -32.80) >DroAna_CAF1 2191 108 - 1 UACACUGUACACUGGUGGCCGCCACAAUGG-AGGUGCUGUCAGGAGAGGCCGGCAUCGCAUC-CGAUGCACCACAAUCCGGGCUGCAGGCCACUAAAUUGUGGCUCCAGC ....(((..((((((((((((((.......-.)))((.(((.(((..(....((((((....-))))))....)..))).))).)).))))))))....)))....))). ( -39.90) >consensus UACACAGAGU____GUGGU__CCACAAAGG_AA____CGCCGGGAUGUGCCAGUA__GCAUUCGGCUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC ..............((((...))))...((........(((.(((((((...(((..((.....)))))..))).)))).))).....(((((......))))).))... (-21.12 = -21.88 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:50 2006