Locus 1655

Sequence ID 2R_DroMel_CAF1
Location 6,257,123 – 6,257,228
Length 105
Max. P 0.627659
window2763

overview

Window 3

Location 6,257,123 – 6,257,228
Length 105
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.09
Mean single sequence MFE -36.85
Consensus MFE -27.00
Energy contribution -26.92
Covariance contribution -0.08
Combinations/Pair 1.04
Mean z-score -1.13
Structure conservation index 0.73
SVM decision value 0.19
SVM RNA-class probability 0.627659
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6257123 105 - 20766785
AAGGACGAGGGCUGCGCCCAGAUGAUGUGCAAGCGCUGCAAGCACGUCUUCUGCUGGUACUGCCUGGCCAGUUUGGAUGUAAGU-UC--CU------AGAAUCUGGCAAGU--CUA
..((((..((((.(..((((((.(((((((..((...))..))))))).))))..))..).)))).(((((...(((.......-))--).------.....)))))..))--)). ( -41.60)
>DroVir_CAF1 295 112 - 1
AAGGACGAGGGAUGUGCCCAGAUGAUGUGCAAGCGCUGCAAGCACGUCUUCUGCUGGUACUGUCUGGCCAGCCUGGAUGUGAGU-AUAAUAGUGAGAGUUAAUUGCCAGCUGC---
..((.(.(((.(.(((((((((.(((((((..((...))..))))))).))))..)))))).))).)))(((.(((...(((.(-...........).)))....))))))..--- ( -34.30)
>DroGri_CAF1 299 107 - 1
AAGGACGAGGGCUGUGCCCAGAUGAUGUGCAAGCGUUGCAAGCACGUCUUCUGCUGGUACUGCCUGGCCAGUUUGGAUGUGAGU-AG-----ACUCUGC-AGUUGACAGCU--UGA
..((....((((.(((((((((.(((((((..((...))..))))))).))))..))))).))))..)).(((....((((((.-..-----.))).))-)...)))....--... ( -39.20)
>DroEre_CAF1 289 106 - 1
AAGGACGAGGGCUGCGCCCAGAUGAUGUGCAAGCGCUGCAAGCACGUCUUCUGCUGGUACUGCCUGGCCAGUUUGGAUGUAAGUGCC--AC------AAAAUCCCACAAAU--GGU
..((....((((...)))).(((..((((...(((((......((((((...((((((........))))))..)))))).))))))--))------)..)))))......--... ( -33.30)
>DroMoj_CAF1 295 110 - 1
AAGGACGAGGGCUGCGCCCAGAUGAUGUGCAAGCGGUGCAAGCACGUCUUCUGCUGGUACUGUCUGGCCAGUCUCGAUGUGAGU-GU-----UGUCUGUUAUUUGUCAUCUGUUAU
...(((..((((...))))((((((((.(((..(((..(...((((((....((((((........))))))...)))))).).-.)-----))..)))....))))))))))).. ( -39.00)
>DroAna_CAF1 296 102 - 1
AAGGACGAGGGCUGUGCCCAGAUGAUGUGCAAGCGCUGCAAGCACGUCUUCUGCUGGUACUGUCUGGCCAGUUUGGAUGUGAGU-UC---U------GGAAUAUUUUAG----CCA
.........(((((...(((((.....((((.....))))..(((((((...((((((........))))))..)))))))...-))---)------)).......)))----)). ( -33.70)
>consensus
AAGGACGAGGGCUGCGCCCAGAUGAUGUGCAAGCGCUGCAAGCACGUCUUCUGCUGGUACUGCCUGGCCAGUUUGGAUGUGAGU_AC__________GGAAUUUGACAGCU__CGA
..((....((((.(.(((((((.(((((((..((...))..))))))).))))..))).).))))..))............................................... (-27.00 = -26.92 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:49 2006