Locus 1654

Sequence ID 2R_DroMel_CAF1
Location 6,252,933 – 6,253,030
Length 97
Max. P 0.549609
window2762

overview

Window 2

Location 6,252,933 – 6,253,030
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.62
Mean single sequence MFE -20.23
Consensus MFE -13.23
Energy contribution -13.28
Covariance contribution 0.06
Combinations/Pair 1.13
Mean z-score -1.53
Structure conservation index 0.65
SVM decision value 0.03
SVM RNA-class probability 0.549609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6252933 97 + 20766785
AUGGAAUCUUAACCAUGUUCUCUUAAUUUCCAGGUGACCUUCAUCGGCACCAAUAUACCGGUGCAUCCGCAUGUCUACAGCAACGGACACAUCUGCC
((((........))))..............((((((..........(((((........))))).((((..(((.....))).))))..)))))).. ( -22.40)
>DroPse_CAF1 12729 95 + 1
--AAAACACUGACUGUCCGUUGUCUAUUUCUAGGUGACCUUUAUUGGCAACAAUAUACCCGUGCACCCACAUGUCUACAGCAAUGGACACAUCUGUC
--.....((.((.((((((((((.........((((((...(((((....))))).....)).))))....((....))))))))))))..)).)). ( -23.80)
>DroSec_CAF1 13112 97 + 1
AUGGAAUCUUAACCUUCUUCUCUUAAUCUGCAGGUGACCUUCAUCGGCACUAAUAUACCGGUGCAUCCGCAUGUCUACAGCAACGGACACAUCUGCC
.............................(((((((..........(((((........))))).((((..(((.....))).))))..))))))). ( -21.30)
>DroEre_CAF1 13165 97 + 1
UGAGAAUCUUAACCGUCUCCUCCUAAUUGCCAGGUGACCUUCAUCGGCACCAAUAUACCUGUGCAUCCGCAUGUCUACAGCAACGGACACAUCUGCC
.((((..........)))).(((...((((..((((.((......)))))).........((((....)))).......)))).))).......... ( -18.30)
>DroYak_CAF1 22554 95 + 1
UA--AAUCUUAACCUUCUUCUUUUAAUUGCCAGGUGACCUUCAUCGGCACCAAUAUACCUGUGCAUCCACAUGUUUACAGCAACGGACACAUCUGCC
..--......................((((..((((.((......))))))..((.((.((((....)))).)).))..))))((((....)))).. ( -15.50)
>DroPer_CAF1 12678 95 + 1
--AAAACACUGACUGUCCUUUGUCUAUUUCCAGGUGACUUUUAUUGGCAACAAUAUACCCGUGCACCCACAUGUCUACAGCAAUGGACACAUCUGUC
--........(((........)))......((((((.....(((((....))))).....(((....))).((((((......)))))))))))).. ( -20.10)
>consensus
__AGAAUCUUAACCGUCUUCUCUUAAUUUCCAGGUGACCUUCAUCGGCACCAAUAUACCCGUGCAUCCACAUGUCUACAGCAACGGACACAUCUGCC
..............................((((((..........((((..........)))).......(((((........))))))))))).. (-13.23 = -13.28 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:48 2006