Locus 1653

Sequence ID 2R_DroMel_CAF1
Location 6,248,142 – 6,248,233
Length 91
Max. P 0.939516
window2761

overview

Window 1

Location 6,248,142 – 6,248,233
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 74.19
Mean single sequence MFE -25.73
Consensus MFE -11.10
Energy contribution -12.20
Covariance contribution 1.10
Combinations/Pair 1.11
Mean z-score -2.30
Structure conservation index 0.43
SVM decision value 1.28
SVM RNA-class probability 0.939516
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6248142 91 - 20766785
ACAGCUCCCUAAAGAGCAUCGAGCUGGCAAG---GAUCGAAGGUUUUUUGCCAAAAUGCAAAUGCAUUGUUUAUGUGGCAUAAACAAGCAUUCA
...((((......)))).....(((((((((---((.(....).)))))))))....)).(((((.(((((((((...)))))))))))))).. ( -29.80)
>DroPse_CAF1 7811 77 - 1
---------UGCACAGGAUCGAU-GGACAAGGCAGACCCAAG-------GCUGCGUUGCUGGCGCAUUGUUUACCGGGCAUAAACAAAGUGCCA
---------..............-((.(((.((((.((...)-------))))).)))))(((((.(((((((.......))))))).))))). ( -24.60)
>DroSec_CAF1 8383 90 - 1
ACAGCUCCCUAAAGAGCAUCGAGCUGGCAAG---GAUCGAAGGUU-UUCGCCACAAUGCAAAUGCAUUGUUUACGUGGCAUAAACAAGCAUUCA
.((((((.............))))))....(---(((.(...(((-(..((((((((((....)))))(....))))))..))))...))))). ( -25.42)
>DroSim_CAF1 12202 90 - 1
ACAGCUCCCUAAAGAGCAUCGAGCUGGCAAG---GAUCGAAGGUU-UUCGCCACAAUGCAAAUGCAUUGUUUACGUGGCAUAAACAAGCAUUCA
.((((((.............))))))....(---(((.(...(((-(..((((((((((....)))))(....))))))..))))...))))). ( -25.42)
>DroEre_CAF1 8393 70 - 1
ACAGCUCCCCCAAGGGCAUCGAGCUGGCAAG---GAUCG---------------------AGUGCAUUGUUUACGCGGUAUAAACAAGCAUUCA
.(((((((((...)))....)))))).....---....(---------------------(((((.(((((((.......))))))))))))). ( -23.90)
>DroYak_CAF1 17628 90 - 1
ACAGCUCCCCAAAGAGCAUCGAGCUGGCAAG---GAUCGAAGGUU-UUAGCCACAAUGCAAGUGCAUUGUUUACGUGGCAUAAACAAGCAUUCC
.((((((.............))))))....(---((..(...(((-(..((((((((((....)))))(....))))))..))))...)..))) ( -25.22)
>consensus
ACAGCUCCCUAAAGAGCAUCGAGCUGGCAAG___GAUCGAAGGUU_UU_GCCACAAUGCAAAUGCAUUGUUUACGUGGCAUAAACAAGCAUUCA
.((((((.............))))))..................................(((((.(((((((.......)))))))))))).. (-11.10 = -12.20 +   1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:47 2006