Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,247,249 – 6,247,341 |
Length | 92 |
Max. P | 0.655365 |
Location | 6,247,249 – 6,247,341 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.08 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -7.44 |
Energy contribution | -8.84 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.33 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6247249 92 - 20766785 UAAAAAUUUGUCAAUCCAAUUUG--------GGUUGACAAGUUAUACUGACGACAGUUUAGAAAAGUUGUUGUGGUCCCUAGAAUGGAUGUGUUUUUUUU ....(((((((((((((.....)--------))))))))))))((((..((((((..((....))..)))))).((((.......))))))))....... ( -25.70) >DroSec_CAF1 7501 83 - 1 UAAAAAUUUGUCAAGCCAAUUUU--------GGUUGACAAGUUAUACUGA---CAGUUCAGAAAAGUUGUUGUGGUCCCUACAAUGG---UGUUU---UU ....((((((((((.(((....)--------))))))))))))...((((---....))))(((..(..((((((...))))))..)---..)))---.. ( -21.30) >DroSim_CAF1 11328 83 - 1 UAAAAAUUUGUCAAGCCAAUUUG--------GGUUGACAAGUUAUACUGA---CAGUUCAGAAAAGUUGUUGUGGUCCCUACAAUGG---UGUUU---UU ....((((((((((.((.....)--------).))))))))))...((((---....))))(((..(..((((((...))))))..)---..)))---.. ( -23.30) >DroEre_CAF1 7548 91 - 1 UAAAAAAUUGCCAAGCCAACUGGAAUAUGCCGAUUGACAAGUUAUACUGACGGCACUCUAGACAAGUU---GUGGUCCCUACAAUGG---ACUUC---UU ............(((((..(((((...(((((..................))))).)))))....(((---((((...)))))))))---.))).---.. ( -17.67) >DroYak_CAF1 16768 94 - 1 UAAAAAGUUGUCAAGCUGACUUGAAGCUGUCGAUUGACAAGUUAUACUGACGGCACUCUGGAAAAGUUGUUGUGGUCCCUACAAUGG---ACUUU---UU ......(((((((((((.......))))(((....))).........)))))))......(((((((..((((((...))))))..)---.))))---)) ( -24.00) >consensus UAAAAAUUUGUCAAGCCAAUUUG________GGUUGACAAGUUAUACUGACG_CAGUUUAGAAAAGUUGUUGUGGUCCCUACAAUGG___UGUUU___UU ....((((((((((.(...............).))))))))))...((((.......))))......((((((((...)))))))).............. ( -7.44 = -8.84 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:46 2006