Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,425,677 – 1,425,783 |
Length | 106 |
Max. P | 0.832424 |
Location | 1,425,677 – 1,425,783 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.03 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -23.34 |
Energy contribution | -25.06 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.65 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1425677 106 - 20766785 UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGUCGACAUUUACACGCCGCUUUCGACUGGCGGAGCUUGGCUUUUGUCUUAAGCAA--------------GCCUCUGGCCGGUUGCUUC .(((((......))))).(((((((((((((....)))))))....((((((.......)))((((((((.(((.......))))))--------------).))))))).))))))... ( -36.50) >DroSec_CAF1 44116 106 - 1 UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCCGCUUUCCACUGGCGGCGCUUGGCUUUUGUCUUAAGCAA--------------GCCCCUGACCGGUUGCUCC .(((((......))))).(((((((((((((....)))))))....((((((.......))))))(((((.(((.......))))))--------------))........))))))... ( -38.10) >DroSim_CAF1 49182 95 - 1 UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCCGCUUUCCACUGGCGGCGCUUGGCUUUUGUCUUAAGCA-------------------------GGUUGCUCC .(((((......))))).(((((((((((((....)))))))....((((((.......))))))(((((((....)))..)))).-------------------------))))))... ( -36.40) >DroEre_CAF1 42244 118 - 1 UUU-CCUUGUCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCUGCUUUCGACUGAUGUUGCUUGGCCUUUGUCUUAAGCAAUCCCGUCGCCUCCAGCCCC-GACUGCUUGCUCC (((-(((....)))))).((((.((((((((....)))))))....((((....((((.(..(((((((((........)))))))))..)))))....))))...-).))))....... ( -32.20) >DroYak_CAF1 46837 120 - 1 UUUACCUUUCCAGGAAACGCAGCCAAUUGGUGGCCGACAUUUACACGCUGCUUUCGACUGGCGUAGCUUGGCUUUUGUCUUAAGCUAUCCCUUUGCCUUCAGCCCCUGGCUGGUAGCUCC .(((((...(((((....(((((.....((((.....)))).....)))))....((..((((.((..((((((.......))))))...)).)))).))....)))))..))))).... ( -37.30) >consensus UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCCGCUUUCGACUGGCGGAGCUUGGCUUUUGUCUUAAGCAA______________GCCCCUGACCGGUUGCUCC .(((((......))))).(((((((((((((....)))))))....((((((.......))))))(((((((....)))..))))..........................))))))... (-23.34 = -25.06 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:42 2006