Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,218,658 – 6,218,765 |
Length | 107 |
Max. P | 0.624996 |
Location | 6,218,658 – 6,218,765 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.60 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -19.66 |
Energy contribution | -21.43 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.04 |
Mean z-score | -3.09 |
Structure conservation index | 0.72 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6218658 107 - 20766785 AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGUUGCUGAUGCUGUAGUACUCGUACUUUGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC .....(....)..((....)).............((((.((((((..((((((.(((....)))((((((...))))))))))))...)))))).))))........ ( -30.40) >DroSec_CAF1 49681 107 - 1 AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGUUGCUGAUGCUGUAGUACUCAUACUUAGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC .....(....)..((....)).............((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ ( -27.00) >DroSim_CAF1 51150 107 - 1 AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCUAUUGUUGUUGCUGAUGCUGUAGUACUCAUACUUAGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC .....(....)..((....))(((......))).((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ ( -27.10) >DroEre_CAF1 52060 107 - 1 AAUACCGAGAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGCUGCUGAUGCUGUAGUACUCAUACUUUGCCAAAGGCUGAACAGCAACAAGCAGCUACAAAUGCAACU ......(.((((.((....)).......))))).((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ ( -29.90) >DroYak_CAF1 53008 107 - 1 AAUACCAAAAGAAUCGAAAGAAGAAAAGUCUUCAUUGUUGUUGCUGAUGCUGUACUACUCAUACUUCGCCAAAGGCGGAACAGCACCAAGCAGCUACAAAUGCAAAC ...................(((((....))))).((((.((((((..((((((...........((((((...))))))))))))...)))))).))))........ ( -29.30) >DroAna_CAF1 60413 91 - 1 AAUGUUGA-ACAAUCGAAGGAA-----GUUUCCUCUGCUUCUGCUGA------ACU----AUACUUUGCCAACGGCAGAAAAGCAACAAGCAGCUACAAAUGCAAAC ..(((((.-....(((..((((-----((.......))))))..)))------...----....((((((...))))))....))))).(((........))).... ( -20.60) >consensus AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGUUGCUGAUGCUGUAGUACUCAUACUUUGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC .............((....)).............((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ (-19.66 = -21.43 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:39 2006