Locus 1646

Sequence ID 2R_DroMel_CAF1
Location 6,211,180 – 6,211,272
Length 92
Max. P 0.671026
window2751

overview

Window 1

Location 6,211,180 – 6,211,272
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -26.53
Consensus MFE -21.35
Energy contribution -21.97
Covariance contribution 0.61
Combinations/Pair 1.14
Mean z-score -1.37
Structure conservation index 0.80
SVM decision value 0.29
SVM RNA-class probability 0.671026
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6211180 92 - 20766785
CUCGCAAAGGUGCAGGUAUUUGACUGCCUUUGGCAGUUUCAAGUGCACGGGCAUGUGUGCAUAAACGAGACUCCUCCCUCCUCCUUCUCCUG
...(((.(.((((..(((((((((((((...)))))..))))))))....)))).).)))......(((....)))................ ( -26.60)
>DroSec_CAF1 42302 88 - 1
CUCGCAAAGGUGCAGGUACUUGACUGCCUUUGGCAGUUUCAAGUGCACGGGCAUGUGUGCAUAAACGAGACUCCU----CCUACUCCACCUG
...(((.(.((((..(((((((((((((...)))))..))))))))....)))).).)))......(((....))----)............ ( -28.90)
>DroSim_CAF1 43683 88 - 1
CUCGCAAAGGUGCAGGUAUUUGACUGCCUUUGGCAGUUUCAAGUGCACGGGCAUGUGUGCAUAAACGAGACUCCU----CCUACUCCUCCUG
...(((.(.((((..(((((((((((((...)))))..))))))))....)))).).)))......(((....))----)............ ( -26.60)
>DroEre_CAF1 44905 77 - 1
CUUGCGAAGGUGCAGGUAUUUGAAUGCCUUUGGCAGUUUCAAGUGCACGGGCAUGUGUGCAUAAACGAGACUCCA----CC-----------
..((((.(.((((..(((((((((((((...))))..)))))))))....)))).).))))..............----..----------- ( -23.10)
>DroYak_CAF1 45584 77 - 1
CUUGCAGAGGGGCAGGUAUUUGACUGCCUUUGGCAGUUUCAAGUGCACGGGCAUGUGUGCAUAAACGAGACUCCU----CC-----------
..(((..((((((((........)))))))).)))(((((..(((((((......)))))))....)))))....----..----------- ( -27.00)
>DroAna_CAF1 50466 89 - 1
-UUGCUUAUAUGCAGUUAUUCGACUGCCUUUGGCACUUUCAAGUGCACGGGCAUGUGUGCCUAAA-GAGGCUCUUUGCGCAGGAU-UUCUCA
-.(((......)))(..((((...(((((...(((((....)))))..)))))(((((((((...-.)))).....)))))))))-..)... ( -27.00)
>consensus
CUCGCAAAGGUGCAGGUAUUUGACUGCCUUUGGCAGUUUCAAGUGCACGGGCAUGUGUGCAUAAACGAGACUCCU____CCU_CU_CUCCUG
...(((.(.((((..(((((((((((((...)))))..))))))))....)))).).)))................................ (-21.35 = -21.97 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:38 2006