Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,204,689 – 6,204,786 |
Length | 97 |
Max. P | 0.622039 |
Location | 6,204,689 – 6,204,786 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 87.83 |
Mean single sequence MFE | -24.14 |
Consensus MFE | -19.38 |
Energy contribution | -19.98 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6204689 97 + 20766785 CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUUGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU------UGCAGAUUGCCAAAGCAAUUUGAAUUAGGU ......((((..((..(((....)))..))))))(((((........((((......))))......------..((((((((....))))))))...))))) ( -24.90) >DroSec_CAF1 35840 97 + 1 CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUUGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU------UGCAGAUAGCCAAAGCAAUUUGAAUUAGGU ......((((..((..(((....)))..))))))(((((........((((......))))......------..(((((.((....)).)))))...))))) ( -20.80) >DroSim_CAF1 37239 97 + 1 CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUCGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU------UGCAGAUAGCCAAAGCAAUUUGAAUUAGGU .....((....(((..(((....)))..))).))(((((........((((......))))......------..(((((.((....)).)))))...))))) ( -20.50) >DroEre_CAF1 38547 97 + 1 CUUUAGAGCUGUUCAUCUCGCUCGAGUGGAAGUUGCCUACUUAACAUGGCUACUUUCAGCCCUCUUU------UCCAGAUUGCCAAGGCAAUUUGAAUUAGGU .....((((..........))))((((((((((.(((..........))).)))))))...)))...------..((((((((....))))))))........ ( -28.40) >DroYak_CAF1 39056 94 + 1 CUUUAGAACUGA---------GUGAGGAGAAGUUGCCUACUUAACAUGGCUACUUUCAGUCCUCUUUUGCUUUUGCAGAUUGCCAAAGCAAUUUGAAUUAGGU ........((((---------..((((((((((.(((..........))).)))))...)))))..(((((((.((.....)).)))))))......)))).. ( -26.10) >consensus CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUUGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU______UGCAGAUUGCCAAAGCAAUUUGAAUUAGGU ........(((............((((.(((((.(((..........))).)))))....))))...........((((((((....))))))))...))).. (-19.38 = -19.98 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:37 2006