Locus 1644

Sequence ID 2R_DroMel_CAF1
Location 6,202,154 – 6,202,255
Length 101
Max. P 0.521551
window2749

overview

Window 9

Location 6,202,154 – 6,202,255
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -19.13
Consensus MFE -16.50
Energy contribution -16.87
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.38
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.521551
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6202154 101 - 20766785
AUUCUCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGAAAAUCCCUCAUAGAAACUGCUGCUCAUGGAUACUUGCUGCCA
......((((.......)))).............((((((....)))))).(((((((.......))))))).....((.((............)).)).. ( -18.40)
>DroSec_CAF1 33348 101 - 1
AUUCUCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGAAAAUCCCUCAUAGAAACUGCUGCUCAUAGAUACUUGCUGCCA
......((((.......)))).............((((((....)))))).(((((((.......))))))).....((.((............)).)).. ( -18.40)
>DroSim_CAF1 34758 101 - 1
AUUCUCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGAAAAUCCCUCAUAGAAACUGCUGCUCAUAGAUACUUGCUGCCA
......((((.......)))).............((((((....)))))).(((((((.......))))))).....((.((............)).)).. ( -18.40)
>DroEre_CAF1 36193 101 - 1
AUUCUCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGGAAAUCCCUCAUAGAAACUGCUGCUCAUAGAUACUUGCUGCCA
......((((.......)))).............((((((....)))))).((((((((.....)))))))).....((.((............)).)).. ( -22.00)
>DroYak_CAF1 36573 101 - 1
AUUCUCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGAAAAUCCCUCAUAGAAACUGCUGCUGAUAGAUGCUUGCUGCCA
......((((.......))))(((((((((........)))))))))(((.(((((((.......))))))).....((.((........))..))))).. ( -20.00)
>DroAna_CAF1 42209 96 - 1
AUUCGCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGAAAAUCCCCCAUAAAGA----UGCCCCCAGAUAC-AGCGGCCA
..(((((((((..........(((((((((........)))))))))(((.(((((.(........))))))...----))).)))))....-.))))... ( -17.60)
>consensus
AUUCUCCUGGGACUUGACCAGAAAUUAAUUAAAAUGCAAAUUAAUUUGCAAUUAUGAGAAAAUCCCUCAUAGAAACUGCUGCUCAUAGAUACUUGCUGCCA
......((((.......)))).............((((((....)))))).(((((((.......))))))).....((.((............)).)).. (-16.50 = -16.87 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:36 2006