Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,198,155 – 6,198,248 |
Length | 93 |
Max. P | 0.868318 |
Location | 6,198,155 – 6,198,248 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.90 |
Mean single sequence MFE | -18.78 |
Consensus MFE | -14.38 |
Energy contribution | -14.38 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.18 |
Mean z-score | -2.02 |
Structure conservation index | 0.77 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6198155 93 - 20766785 AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCGUUCGGCACAUAAAUAACCCUGGGCCCCUUAAUAU ....(((((((.......))))))).((((((((((((.(((((.(........))))))))))).))))))).................... ( -20.20) >DroSec_CAF1 29367 93 - 1 AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCGUUCGGCACAUAAAUAACCCUGGGCCCCUCAAUAU ....(((((((.......))))))).((((((((((((.(((((.(........))))))))))).))))))).....((((...)))).... ( -20.60) >DroSim_CAF1 29304 93 - 1 AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCAUUCGGCACAUAAAUAACCCUGGGCCCCUCAAUAU ....(((((((.......))))))).((((((((((((.(((((.(........))))))))))).))))))).....((((...)))).... ( -21.00) >DroEre_CAF1 32004 76 - 1 AAUAGAAUUCA----------------UUUAUGGCCGGCAUGGUCGUUCUGUCUUUUCAUGUGGCACAUAAAUAAACCUG-GCCCCUCAAUAU ..........(----------------((((((((((.(((((.............))))))))).))))))).......-............ ( -15.32) >DroYak_CAF1 32503 92 - 1 AAUAGAAUUUAUUUACAUUUAAUUUCGUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCAUUUGGCACAUAAAUAACCCUG-GCCCCUCGAUAU ....(((.(((........))).)))((((((((((((.(((((.(........))))))))))).))))))).......-............ ( -16.80) >consensus AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCAUUCGGCACAUAAAUAACCCUGGGCCCCUCAAUAU ..........................((((((((((((.(((((...........)))))))))).))))))).................... (-14.38 = -14.38 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:34 2006