Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,193,823 – 6,193,922 |
Length | 99 |
Max. P | 0.852605 |
Location | 6,193,823 – 6,193,922 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 88.46 |
Mean single sequence MFE | -19.64 |
Consensus MFE | -16.95 |
Energy contribution | -16.84 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.23 |
Structure conservation index | 0.86 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6193823 99 - 20766785 AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUAUGUUAUUUAAAUAGCUAAAAGGCA-----CUACUAUAUGUAUCUGGGCCAAUAAAUAUGAAUUCAAUA ...........((((((.(((((.......(((((((.........)))))))..((...-----...))...))))).))))))................... ( -19.70) >DroSec_CAF1 24982 104 - 1 AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUCUAUUAUUUAAAUAGCUAAAGGGCAGUCCACAAAUAUAUGUAUGUGGGUCAAUGAGUAUGAAUUUAAUA ...........((((((((((((.((((..(((((.............)))))))))...(....).......))))))))))))................... ( -19.22) >DroSim_CAF1 24944 104 - 1 AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUCUACUAUUUAAAUAGCUAAAGGGCAGUCCACAAAUAAGUGUAUGUGGGUCAAUGAAUAUGAAUUUAAUA ...........((((((((((((..((((...(((((.((((....))))....))))).(....)...))))))))))))))))................... ( -20.00) >consensus AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUCUAUUAUUUAAAUAGCUAAAGGGCAGUCCACAAAUAUAUGUAUGUGGGUCAAUGAAUAUGAAUUUAAUA ...........((((((((((((.((((..(((((.............))))).))))...............))))))))))))................... (-16.95 = -16.84 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:33 2006