Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,193,157 – 6,193,256 |
Length | 99 |
Max. P | 0.912634 |
Location | 6,193,157 – 6,193,256 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.81 |
Mean single sequence MFE | -25.35 |
Consensus MFE | -17.44 |
Energy contribution | -17.83 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.11 |
Mean z-score | -2.12 |
Structure conservation index | 0.69 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6193157 99 - 20766785 ACUCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCGAAC ..((.((((((..(((...(((((((((((((((((.......))))))))...((.....))........))))))))).))).)))...))).)).. ( -27.40) >DroPse_CAF1 21013 80 - 1 -----GGGGGCCCGGGCAUGGCUCAUUAGCCAAAGUGCCAUCAACUUUGGGUCGUCUAAUUGAAUCAACACUAAUGGGU-----AGGACA--------- -----....((((((((((((((....)))))...)))).......(((..(((......)))..)))......)))))-----......--------- ( -21.50) >DroSim_CAF1 24289 99 - 1 GCUCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCGAAC ..((.((((((..(((...(((((((((((((((((.......))))))))...((.....))........))))))))).))).)))...))).)).. ( -27.40) >DroEre_CAF1 27197 99 - 1 GUUCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCCCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCCAGC ...((((((((..(((...(((((((((((((((((.......))))))))((........))........))))))))).))).))).....))))). ( -29.60) >DroYak_CAF1 27466 99 - 1 GUGCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGCCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCCAAC ((((.(((((......)).((((((((((.((((((.......)))))).....((.....)).......)))))))))).))).)))).......... ( -24.10) >DroPer_CAF1 21665 80 - 1 -----GGGGGCCCGGGCAUGCCUCAUUAGCCAAAGUGCCAUCAACUUUGGGUCGUCUAAUUGAAUCAACACUAAUGGGU-----AGGACA--------- -----((....)).(...((((.(((((((((((((.......))))))).(((......))).......)))))))))-----)...).--------- ( -22.10) >consensus G_UCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUC_AAC ...................(((((((((((((((((.......)))))))....((.....)).......))))))))))................... (-17.44 = -17.83 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:32 2006