Locus 164

Sequence ID 2R_DroMel_CAF1
Location 1,425,536 – 1,425,637
Length 101
Max. P 0.717210
window366

overview

Window 6

Location 1,425,536 – 1,425,637
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -31.98
Consensus MFE -21.78
Energy contribution -22.82
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.68
SVM decision value 0.39
SVM RNA-class probability 0.717210
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1425536 101 + 20766785
CCUCGGGAGCGUAUACGUAACGU------------AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUA-------CACCAACCCUCAGCAGCACCCGCGAUGUUGUAA
....(((.(.((((((...((((------------..((....))..((((((((......)))))))).)))).)))))-------).)...)))...((((((.......)))))).. ( -33.20)
>DroSec_CAF1 43968 108 + 1
ACUCGGGAGCGUAUACGUAACGU------------AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUAUGGUGAACACCAACCCUCAGCAGCACCCGCGAUGUUGUAA
.(.((((.((((((((...((((------------..((....))..((((((((......)))))))).)))).))))))(((....)))...........)).)))).)......... ( -36.30)
>DroSim_CAF1 49034 108 + 1
ACUCCGGAGCGUAUACGUAACGU------------AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUACGGUGAACACCAACCCUCAGCAGCACCCGCGAUGUUGUAA
......(((.((((((...((((------------..((....))..((((((((......)))))))).)))).))))))(((....)))....))).((((((.......)))))).. ( -34.80)
>DroEre_CAF1 42100 113 + 1
ACUCGGGAACGUAUACGUAACGCAGAGGAAACGGAAACGGAAACGGAAUCAGAGCGAUAAAGUUCUGUUAGCGUAGUGCA-------CACCAACCCUUAGCAGCACCCGCGAUGUUGUAA
.(.((((.(((....)))...((.((((...((....)).....((...((((((......))))))...((.....)).-------..))...)))).))....)))).)......... ( -31.10)
>DroYak_CAF1 46710 96 + 1
ACUCGGGAACGUAUACGUAAC-----------------GAAAACGGAAUCAGAGCGAUAAAGUUCUGUUAGCAUAGUGUA-------CACCAACUCACAGCAUCACCCGCGGUGUUGUAA
....((....((((((....(-----------------(....))(...((((((......))))))....)...)))))-------).)).....((((((((......)))))))).. ( -24.50)
>consensus
ACUCGGGAGCGUAUACGUAACGU____________AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUA_______CACCAACCCUCAGCAGCACCCGCGAUGUUGUAA
....(((......(((((...................((....))..((((((((......)))))))).)))))(((.........)))...)))...((((((.......)))))).. (-21.78 = -22.82 +   1.04) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:41 2006