Locus 1639

Sequence ID 2R_DroMel_CAF1
Location 6,189,294 – 6,189,393
Length 99
Max. P 0.856069
window2744

overview

Window 4

Location 6,189,294 – 6,189,393
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 96.98
Mean single sequence MFE -29.76
Consensus MFE -26.88
Energy contribution -27.28
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.90
SVM decision value 0.81
SVM RNA-class probability 0.856069
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6189294 99 - 20766785
GGCUUUGCACUUGCCUUUGCAUUUGUCUUUGCUUUUGACUUUGCAGAGACGCGCACGCGUAGCCCCGAGUGAAAAAUAAUACCGUU-CUUGCUGGCCAAA
((((...((((((.(((((((...(((.........)))..)))))))((((....)))).....))))))............((.-...)).))))... ( -28.00)
>DroSec_CAF1 20423 99 - 1
GGCUUUGCACUGGCCUUUGCAUUUGUCUUUGCUUUUGACUUUGCAGAGACGCGCACGCGUAGCCCCGAGUGGAAAAUAAUACCGUU-CUUGCUGGCCAAA
((((..(((..((((((((((...(((.........)))..)))))))((((....)))).)))..((((((.........)))))-).))).))))... ( -32.70)
>DroSim_CAF1 20386 99 - 1
GGCUUUGCACUUGCCUUUGCAUUUGUCUUUGCUUUUGACUUUGCAGAGACGCGCACGCGUAGCCCCGAGUGGAAAAUAAUACCGUU-CUUGCUGGCCAAA
((((..(((...(((((((((...(((.........)))..)))))))((((....)))).))...((((((.........)))))-).))).))))... ( -29.40)
>DroEre_CAF1 23404 100 - 1
GGCUUUGCACUUGCCUUUGCAAUUGUCUUUGCUUUUGACUUUGCAGACACGCGCACGCGUAGCCCCGAGUGGAAAAUAAUACCGUUUUUUGCUGGCCAAA
((((.(((...(((.(((((((..(((.........))).)))))))...)))...))).))))((.((..((((((......))))))..))))..... ( -28.60)
>DroYak_CAF1 23454 99 - 1
GGCUUUGCACUUGCCUUUGCAUUUGUCUUUGAUUUUGACUUUGCAGAGACGCGCACGCGUAGCCCCGAGUGGAAAAUAAUACCGUU-UUUGCUGGCCAAA
((((..(((((((.(((((((...(((.........)))..)))))))((((....)))).....))))).((((((......)))-))))).))))... ( -30.10)
>consensus
GGCUUUGCACUUGCCUUUGCAUUUGUCUUUGCUUUUGACUUUGCAGAGACGCGCACGCGUAGCCCCGAGUGGAAAAUAAUACCGUU_CUUGCUGGCCAAA
((((((.((((((.(((((((...(((.........)))..)))))))((((....)))).....)))))).)))........((.....))..)))... (-26.88 = -27.28 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:31 2006