| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,166,071 – 6,166,162 |
| Length | 91 |
| Max. P | 0.998627 |
| Location | 6,166,071 – 6,166,162 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 90.86 |
| Mean single sequence MFE | -12.35 |
| Consensus MFE | -11.80 |
| Energy contribution | -11.42 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.96 |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.998627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6166071 91 + 20766785 CAUCUUUCACUGGCACUUUAAUUAUGUUUUCGUGGAGUCCACAACUCCACUACUAGGCAACUUCCAUACCUAUAUAUCUAUAACUCUAUCU ..........(((..................(((((((.....)))))))....((....)).)))......................... ( -13.10) >DroSec_CAF1 4293 89 + 1 CCUCUUUCACUGGCACUUUAAUUAUGUUUUCGUGGAGUCCACAACUCCACUACUAGGCAACUUCCAUACCUAUAU--AUAUAACUCUAUCU ..........(((..................(((((((.....)))))))....((....)).))).........--.............. ( -13.10) >DroSim_CAF1 4315 89 + 1 CAUCUUUCACUGGCACUUUAAUUAUGUUUUCGUGGAGUUCACAACUCCACUACUAGGCAACUUCCAUACCUAUAU--CUAUAACUCUAUCU ..........(((..................(((((((.....)))))))....((....)).))).........--.............. ( -13.20) >DroEre_CAF1 4306 89 + 1 CAUCUUUCACUGGCACUUUAAUUAUGUUUUCGUGGAGUCCACAACUCCACUUCUGGGCAACUUCCAUAUCUAUAU--CUAUAACUCUAUCU ..........(((..................(((((((.....)))))))....((....)).))).........--.............. ( -13.10) >DroYak_CAF1 4342 89 + 1 CAUCUUUCACUGGCACUUUAAUUAUGUUUUCGUGGAGUCCACAACUCCACUUCUAGGCAACUUCCAUAUCUCUAU--CUAUAACUCUAUCU ..........(((..................(((((((.....)))))))....((....)).))).........--.............. ( -13.10) >DroAna_CAF1 4097 87 + 1 CAUCUUUCUCUGGCACUUUAAUUAUGUUUUCGUGCUGUCCACAACUGCACUUCUAGG--GCUUCUAUCUCGACAU--CUAUAUCUAUAUCC .......((((((.((.........))....((((.((.....)).))))..)))))--)...............--.............. ( -8.50) >consensus CAUCUUUCACUGGCACUUUAAUUAUGUUUUCGUGGAGUCCACAACUCCACUACUAGGCAACUUCCAUACCUAUAU__CUAUAACUCUAUCU ..........(((..................(((((((.....)))))))....((....)).)))......................... (-11.80 = -11.42 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:24 2006