Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,160,127 – 6,160,225 |
Length | 98 |
Max. P | 0.624106 |
Location | 6,160,127 – 6,160,225 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 73.21 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -17.96 |
Energy contribution | -18.27 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.26 |
Mean z-score | -0.63 |
Structure conservation index | 0.77 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6160127 98 - 20766785 UGCCAUGUACGAUGUCACCGACAGGAUCAUUACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG-AUCUUUAAUUACCUGC-----AGAGUGAA .((..((((.(...((((((.((.((((...((((....))))(((.....))).)))).))))))))..((((-....))))...).)))-----)..))... ( -25.70) >DroGri_CAF1 172153 94 - 1 CGCCAUGUACGAUGUGACAGACAGACUCAUUGUGUUCAUGGGCGGCAAGAAGCCAGAUCAUGCUGUAAGAUUCCCAUAUUUGAUAACA---AUUU--CA----- ..((((((((((((.(.(.....).).)))))))..)))))((((((.((.......)).))))))......................---....--..----- ( -19.10) >DroSec_CAF1 150317 88 - 1 UGCCAUGUACGAUGUCACCGACAGGAUCAUCACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG-AACUUUAAUUUUCU--------------- ..............((((((.((.((((...((((....))))(((.....))).)))).))))))))......-..............--------------- ( -24.30) >DroSim_CAF1 158349 88 - 1 UGCCAUGUACGAUGUCACCGACAGGAUCAUAACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG-AUCCUUAGCCCUAA--------------- ..............((((((.((.((((...((((....))))(((.....))).)))).))))))))......-..............--------------- ( -24.30) >DroEre_CAF1 154628 78 - 1 UGCCAUGUACGAUGUCACCGACAGGAUCAUCACCUUCCUGGGUGGCAAGAAGCCCGAUCAUGCGGUUA-----G-AUCUUUAAU-------------------- ..........(((.(.((((.((.((((...((((....))))(((.....))).)))).)))))).)-----.-)))......-------------------- ( -22.20) >DroPer_CAF1 143035 89 - 1 UGCCAUGUACGAUGUCACCGACAGGAUCAUUGCGUUCCUGGGCGGCAAGCGACCAGAUCACGCUGUGGGUUUAG-CUAUU-----ACC---AGG-GAAA----- .((.(((.....((((...))))....))).)).(((((((..(((((((..((((......))).).)))).)-))...-----.))---)))-))..----- ( -24.50) >consensus UGCCAUGUACGAUGUCACCGACAGGAUCAUUACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG_AUCUUUAAU_ACC________________ ..............((((((.((.((((...((((....))))(((.....))).)))).)))))))).................................... (-17.96 = -18.27 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:22 2006