Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,424,842 – 1,424,962 |
Length | 120 |
Max. P | 0.998660 |
Location | 1,424,842 – 1,424,962 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.00 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -33.32 |
Energy contribution | -33.20 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.05 |
Mean z-score | -2.17 |
Structure conservation index | 0.96 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1424842 120 + 20766785 AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG .........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. ( -35.00) >DroSec_CAF1 43266 120 + 1 AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG .........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. ( -35.00) >DroSim_CAF1 48322 120 + 1 AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG .........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. ( -35.00) >DroEre_CAF1 41443 120 + 1 AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAGCAUCGAGCUCCUGCGGUGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG .........(((((((.(((.((((((((.((..((((((.(((((((...)))).((((...((....))...))))....)))))))))..))..)))))))).)))..))))))).. ( -36.00) >DroYak_CAF1 46030 120 + 1 AAAUGAAGAUUGGCAAAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUUCAAAACAAUAUAUGUCAUGCACAUGCCAAGG .........((((((..(((.(((((((((((..(((((.......(((((........))).)))))))..))))))((((....))))..........))))).)))...)))))).. ( -32.51) >consensus AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG .........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. (-33.32 = -33.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:40 2006