Locus 1624

Sequence ID 2R_DroMel_CAF1
Location 6,090,974 – 6,091,074
Length 100
Max. P 0.696773
window2718

overview

Window 8

Location 6,090,974 – 6,091,074
Length 100
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 94.64
Mean single sequence MFE -24.64
Consensus MFE -20.96
Energy contribution -20.84
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.38
Structure conservation index 0.85
SVM decision value 0.34
SVM RNA-class probability 0.696773
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6090974 100 - 20766785
AAAGAAGAGGCUUCAUUAGCAUAGAGG--AUAGAGUGCUCGAGUGCGAAAAGAACGAAGGCGAGGGGGAAAUAUCCUGGCGGAAAUGCGCCACAUUCAAGAG
...(((..(((..((((.((((.(((.--((...)).)))..)))).............((.((((.......)))).))...)))).)))...)))..... ( -23.50)
>DroSec_CAF1 108725 101 - 1
-AAGAAGAGGCUUCAUUAGCAUAGAAGUGCUAGAGUGCUCGAGUGCGAAAAGAACGAAGGCGAGGGGGAAAUAUCCUGGCGGAAAUGCGCCACAUUCAAGAG
-..((((...))))..((((((....))))))(((((((((....((.......))....)))).((((....))))((((......)))).)))))..... ( -27.40)
>DroSim_CAF1 113842 100 - 1
AAAGAAGAGGCUUCAUUAGCAUAGAGG--AUAGAGUGCUCGAGUGCGAACAGAACGAAGGCGAGGGGGAAAUAUCCUGGCGGAAAUGCGCCACAUUCAAGAG
...(((..(((..((((.((((.(((.--((...)).)))..)))).............((.((((.......)))).))...)))).)))...)))..... ( -23.50)
>DroEre_CAF1 112129 100 - 1
AAAGAAGAGGCUUCAUUAGCAUAGAGG--AUAGAGAGCUUGAGUGCGAAAAGAACGUGGGCGAGGGGCAAAUAUCCUGGCGGAAGUGCGCCACAUUCAAGAG
...((((...))))....((((..(((--........)))..)))).....(((.((((((.((((.......)))).((....)))).)))).)))..... ( -23.60)
>DroYak_CAF1 110454 100 - 1
AAAGAAGAGGCUUCAUUAGCAUAGAGG--AUAGAGUGCUCGAGUGCGAAAAGAACGAGGGCGAGGGGGAAAUAUCCUGGCGGAAAUGCGCCACUUUCAAGAG
........(.((((.((.((((.(((.--((...)).)))..))))......)).)))).)((((((((....)))(((((......))))))))))..... ( -25.20)
>consensus
AAAGAAGAGGCUUCAUUAGCAUAGAGG__AUAGAGUGCUCGAGUGCGAAAAGAACGAAGGCGAGGGGGAAAUAUCCUGGCGGAAAUGCGCCACAUUCAAGAG
...((((.(((..((((.((((.(((...........)))..)))).............((.((((.......)))).))...)))).))).).)))..... (-20.96 = -20.84 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:07 2006