Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,087,014 – 6,087,104 |
Length | 90 |
Max. P | 0.807557 |
Location | 6,087,014 – 6,087,104 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 85.46 |
Mean single sequence MFE | -14.65 |
Consensus MFE | -13.50 |
Energy contribution | -13.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.92 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6087014 90 + 20766785 AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCUUCUAUCCGCCAUCUCUGCAUCUUCUUUUCGUUUC ....................(((((((((((.....))))))).....((.((..........)))).....)))).............. ( -15.80) >DroSec_CAF1 104712 90 + 1 AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCUUCUAUCCGCCAUCUCUGCAUCUUCUCUUCGUUUC ....................(((((((((((.....))))))).....((.((..........)))).....)))).............. ( -15.80) >DroEre_CAF1 108096 87 + 1 AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCGUCUAUCCGCCAUCUCUGCAUCU---CUUCUUUUC ....................(((((((((((.....))))))).....((.((..........)))).....))))..---......... ( -15.80) >DroYak_CAF1 106385 90 + 1 AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUUCCCGUCUAUCCGCCAUCUCUUCAUCUCCUCUUCUUUUC ........................(((((((.....)))))))............................................... ( -13.50) >DroAna_CAF1 130219 80 + 1 AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUCAAGCGGCUGAUUUCUGUUUCUUUCUAUCC-CCAUCC--GU-------AUCCGUAUC ........................(((((((.....)))))))....................-......--..-------......... ( -13.50) >DroPer_CAF1 100814 77 + 1 AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUUUCAUUCUAUCC--CAUUC-----------AUUCGCUUC ........................(((((((.....)))))))....................--.....-----------......... ( -13.50) >consensus AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCUUCUAUCCGCCAUCUCUGCAUCU___CUUCGUUUC ........................(((((((.....)))))))............................................... (-13.50 = -13.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:05 2006