Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,424,361 – 1,424,471 |
Length | 110 |
Max. P | 0.854981 |
Location | 1,424,361 – 1,424,471 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -48.48 |
Consensus MFE | -40.92 |
Energy contribution | -41.72 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.18 |
Mean z-score | -1.75 |
Structure conservation index | 0.84 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1424361 110 - 20766785 CCGGACACGUUUCGGUUCAUGC-U-GCCGGGGUGUUCAGCUGACCGGUUGUCCGGU--------AGCUCUGCUCUGUCGGUCAGCUGCGCCAAGUGCCAAAGUUAUGGUGCUAAGGCGUG ..((((((..((((((......-.-))))))))))))((((((((((..(..(((.--------....)))..)..))))))))))(((((.((..(((......)))..))..))))). ( -49.80) >DroSec_CAF1 42779 110 - 1 CCGGACACGUUUCGGUUCCUGC-U-GCCGGGGUGUCCAGCUGACCGGUUGUCCGGU--------UACGCUGCUCUGUCGGUCAGCUGCGCCAACUGCCAAAGUUAUGGUGCUAAGGCGUG ..((((((..((((((......-.-))))))))))))((((((((((..(..(((.--------....)))..)..))))))))))(((((....((((......)))).....))))). ( -48.50) >DroSim_CAF1 47835 110 - 1 CCGGACACGUUUCGGUUCCUGC-U-GCCGGGGUGUCCAGCUGACCGGUUGUCCGGU--------UGCGCUGCUCUGUCGGUCAGCUGCGCCAAGUGCCAAAGUUAUGGUGCUAAGGCGUG ..((((((..((((((......-.-))))))))))))((((((((((..(..(((.--------....)))..)..))))))))))(((((.((..(((......)))..))..))))). ( -53.40) >DroEre_CAF1 40940 109 - 1 CCGGACACGUUUUUGUUCCUGC-U-GCCGGGAUGUCCGGCACACUGGUUGUCCGGUU---------CGCUGCUCUGUCGGUCAGCUGCGCCAAGUGCCAAAGUUAUGGUGCUGAGGCGUG (((((((((....))).((...-(-(((((.....))))))....))..))))))..---------.((((..(....)..)))).(((((.((..(((......)))..))..))))). ( -44.60) >DroYak_CAF1 45577 120 - 1 CAGGACACGUUUUUGUUCCUGGGUGUUCGGGGCGUCCGGCUGACUGGUAGUCCGGCUGUCCGUUUGCGUUGCCCUGUCUGUCAGCUGCGCCAAGUGCCAAAGUUAUGGUGCUAAGGCGUG (((((.(((....))))))))(..(..(((((((..((((((((.....)).))))))..)(....)...))))))..)..)....(((((.((..(((......)))..))..))))). ( -46.10) >consensus CCGGACACGUUUCGGUUCCUGC_U_GCCGGGGUGUCCAGCUGACCGGUUGUCCGGU________UGCGCUGCUCUGUCGGUCAGCUGCGCCAAGUGCCAAAGUUAUGGUGCUAAGGCGUG ..((((((..((((((.........))))))))))))((((((((((..(..((((...........))))..)..))))))))))(((((.(((((((......)))))))..))))). (-40.92 = -41.72 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:39 2006