Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,058,845 – 6,058,942 |
Length | 97 |
Max. P | 0.997591 |
Location | 6,058,845 – 6,058,942 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -27.84 |
Consensus MFE | -26.42 |
Energy contribution | -26.82 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.95 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6058845 97 + 20766785 AAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCACA-GUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCUCUCCA-------- .....((((((((((...(((((.((......)).))..-..)))...............((((((.....).)))))..))))))))))........-------- ( -29.00) >DroSec_CAF1 77305 97 + 1 AAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACAUAA-GUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCUCUCCA-------- .....((((((((((..((((...(((.(((((((....-))))..........((......)).....))).)))))))))))))))))........-------- ( -29.20) >DroSim_CAF1 81049 97 + 1 AAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCCAA-GUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCUCUCCA-------- .....((((((((((..((((...(((.(((((((....-))))..........((......)).....))).)))))))))))))))))........-------- ( -28.70) >DroEre_CAF1 78877 96 + 1 AAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCACAAGUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCCGCCGCUCCCUCCC---------- .....(((((((.((..((((...(((.(((((((.....))))..........((......)).....))).))))))))).)))))))......---------- ( -24.10) >DroYak_CAF1 77831 105 + 1 AAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGAGCACA-GUUGCAACCCUAUAGACCGCCAUCCCUUCGAGCGGAUGUUGCCGCCGCUCCCUCCCCGUCUGCGUC .....(((((((.((..(((((............(((..-..)))...........(((((........).))))))))))).)))))))................ ( -28.20) >consensus AAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCACA_GUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCUCUCCA________ .....((((((((((...(((.....................)))...............((((((.....).)))))..))))))))))................ (-26.42 = -26.82 + 0.40)
Location | 6,058,845 – 6,058,942 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -33.30 |
Energy contribution | -33.86 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.45 |
Structure conservation index | 0.88 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6058845 97 - 20766785 --------UGGAGAGGGAGCGGCAGCAACAUCCGCUCGAAGGGAUGGAGGUCUAUAGGGUUGCAAC-UGUGGUCGGAGGGGAUCAUGCUUGGCUGCCGCUCGAUUU --------........((((((((((....((((..(....)..))))(((((....((..((...-.))..)).....))))).......))))))))))..... ( -38.70) >DroSec_CAF1 77305 97 - 1 --------UGGAGAGGGAGCGGCAGCAACAUCCGCUCGAAGGGAUGGAGGUCUAUAGGGUUGCAAC-UUAUGUCGGAGGGGAUCAUGCUUGGCUGCCGCUCGAUUU --------........((((((((((...((((.(((((.(((.((.((.((....)).)).)).)-))...)).))).))))((....))))))))))))..... ( -36.50) >DroSim_CAF1 81049 97 - 1 --------UGGAGAGGGAGCGGCAGCAACAUCCGCUCGAAGGGAUGGAGGUCUAUAGGGUUGCAAC-UUGGGUCGGAGGGGAUCAUGCUUGGCUGCCGCUCGAUUU --------........((((((((((...((((.(((((.(((.((.((.((....)).)).)).)-))...)).))).))))((....))))))))))))..... ( -37.60) >DroEre_CAF1 78877 96 - 1 ----------GGGAGGGAGCGGCGGCAACAUCCGCUCGAAGGGAUGGAGGUCUAUAGGGUUGCAACUUGUGGUCGGAGGGGAUCAUGCUUGGCUGCCGCUCGAUUU ----------......((((((((((....((((..(....)..))))(((((....((..((.....))..)).....))))).......))))))))))..... ( -38.00) >DroYak_CAF1 77831 105 - 1 GACGCAGACGGGGAGGGAGCGGCGGCAACAUCCGCUCGAAGGGAUGGCGGUCUAUAGGGUUGCAAC-UGUGCUCGGAGGGGAUCAUGCUUGGCUGCCGCUCGAUUU ................((((((((((..(((((........)))))..(((((...((((.((...-.)))))).....))))).......))))))))))..... ( -37.70) >consensus ________UGGAGAGGGAGCGGCAGCAACAUCCGCUCGAAGGGAUGGAGGUCUAUAGGGUUGCAAC_UGUGGUCGGAGGGGAUCAUGCUUGGCUGCCGCUCGAUUU ................((((((((((..(((((........)))))..(((((....((..((.....))..)).....))))).......))))))))))..... (-33.30 = -33.86 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:59 2006