Locus 1612

Sequence ID 2R_DroMel_CAF1
Location 6,044,268 – 6,044,363
Length 95
Max. P 0.639580
window2700

overview

Window 0

Location 6,044,268 – 6,044,363
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 85.61
Mean single sequence MFE -39.93
Consensus MFE -32.49
Energy contribution -33.18
Covariance contribution 0.70
Combinations/Pair 1.21
Mean z-score -1.85
Structure conservation index 0.81
SVM decision value 0.22
SVM RNA-class probability 0.639580
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6044268 95 - 20766785
AGCCAAGGUGGCGCCCAAGGCGUCCAAGGCGAUGACGAGGACAUUGAUGAGGGUAGUGCCGUUGGCGGACCAAACUCGGCCACCGGACCCAAUCC
.(((...(.((((((...)))))))..)))((((.......))))(((..((((....(((.((((.((......)).)))).))))))).))). ( -33.70)
>DroSec_CAF1 62526 95 - 1
AGCCAAGGUGGCGCCCAAGGCGUCCAAGGCGAUGACGAGGACAUUGAUGAGGGUAGUGCCGUUGGCGGACCAAACUCCGCCAGCGGACCCAAUUC
.(((...(.((((((...)))))))..)))((((.......)))).....((((....(((((((((((......)))))))))))))))..... ( -41.60)
>DroSim_CAF1 63578 95 - 1
AGCCAAGGUGGCGCCCAAGGCGUCCAAGGCGAUGACGAGGACAUUGAUGAGGGUAGUGCCGUUGGCGGACCAAACUCCGCCAGCGGACCCAAUUC
.(((...(.((((((...)))))))..)))((((.......)))).....((((....(((((((((((......)))))))))))))))..... ( -41.60)
>DroEre_CAF1 63302 95 - 1
AGCCAAGGUGGCGCCCAAGGCGUCCAAGGCGAUGACGAGGACAUUGACGAGGGUAGUGCCGUUGGCGGACCAAAUUCCGCCAGCGGACCCAAUCC
.(((...(.((((((...)))))))..)))(((..(((.....)))....((((....(((((((((((......))))))))))))))).))). ( -41.70)
>DroYak_CAF1 62179 95 - 1
AGCCAAGGUGGCGCCCAAGGCGUCCAAGGCGAUGACGAGGACAUUGACGAGGGUAGUGCCGUUGGCGGAUCAAACGCCGCCAGCGGACCCAAUCC
.(((...(.((((((...)))))))..)))(((..(((.....)))....((((....((((((((((........)))))))))))))).))). ( -40.20)
>DroPer_CAF1 61685 89 - 1
AGCCAAG---GCGCCCAAGGCGACGUCGGUGAUGCCGAGGAUAUGGAGGAGGCGAGCGCAGCUGCCGGGGGAGUC-ACUCCGGCGGCUUCAGG--
.(((...---.((((...)))).(.((((.....)))).)..........)))....(.(((((((((((.....-.))))))))))).)...-- ( -40.80)
>consensus
AGCCAAGGUGGCGCCCAAGGCGUCCAAGGCGAUGACGAGGACAUUGAUGAGGGUAGUGCCGUUGGCGGACCAAACUCCGCCAGCGGACCCAAUCC
.(((....(((((((...)))).))).)))....................((((....((((((((((........))))))))))))))..... (-32.49 = -33.18 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:50 2006