Locus 1611

Sequence ID 2R_DroMel_CAF1
Location 6,043,963 – 6,044,061
Length 98
Max. P 0.807069
window2699

overview

Window 9

Location 6,043,963 – 6,044,061
Length 98
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 77.77
Mean single sequence MFE -30.65
Consensus MFE -22.31
Energy contribution -22.25
Covariance contribution -0.06
Combinations/Pair 1.05
Mean z-score -1.31
Structure conservation index 0.73
SVM decision value 0.64
SVM RNA-class probability 0.807069
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6043963 98 - 20766785
GGACAUGACAAUGGAGGAGCUGGACCAGACGGCCGGCACCAGCCAGGGUGGCGAAGGAUCUAGUCAAAGUGAGUUUGCAUUCUA-----AUC-----UU---C-UUGUUUCC
(((...((((..(((((((((((.((....)))))))....(((.....)))..((((((.(.((.....)).)..).))))).-----.))-----))---)-)))))))) ( -26.30)
>DroPse_CAF1 61652 97 - 1
GGAUAUGACAAUGGAGGAGCUGGACCAGACGGCCGGCACCAGCCAGGGUGGCGAAGGAUCUAGUCAAAGUGAGUUCUCGCGAGA------GA-----UA---C-UUAUAUAC
.....((((..((((((.(((((.((....))))))).)).(((.....)))......))))))))..((((((((((....))------))-----.)---)-)))).... ( -35.70)
>DroGri_CAF1 72854 109 - 1
GGAAAUGACAAUGGAGGAGCUGGACCAAGCGGCCGGCACCAGUCAGGGUGGCGAAGGAUCUAGUCAAGGUGACUAUCAAAUAAAUGAUAAUAUAAAAUA---UGUGUAUAAC
.....((((..((((((.(((((.((....))))))).)).(((.....)))......)))))))).(....)(((((......)))))..........---.......... ( -24.80)
>DroYak_CAF1 61877 101 - 1
GGACAUGACAAUGGAAGAGCUGGACCAGACGGCCGGCACCAGCCAGGGUGGCGAAGGAUCUAGUCAAAGUGAGUUUGCAUUAGA-----CUUUUC--UU---U-UUGUUUUC
......(((((.(((((((((((.((....))))))).((.(((.....)))...)).((((((((((.....)))).))))))-----.)))))--).---.-)))))... ( -28.60)
>DroMoj_CAF1 78004 111 - 1
GGAUAUGACAAUGGAGGAGCUGGACCAAGCGGCCGGCACCAGUCAGGGUGGCGAAGGAUCUAGUCAAGGUGCGUCUCUGCUCUACAAGCAUCUAAA-UAUCAAAUUAUAUAA
.(((((....(((..((.(((((.((....))))))).)).((.((((..(.((.(.((((.....)))).).)).)..))))))...)))....)-))))........... ( -32.80)
>DroPer_CAF1 61381 97 - 1
GGAUAUGACAAUGGAGGAGCUGGACCAGACGGCCGGCACCAGCCAGGGUGGCGAAGGAUCUAGUCAAAGUGAGUUCUCGCGAGA------GA-----UA---C-UUAUAUAC
.....((((..((((((.(((((.((....))))))).)).(((.....)))......))))))))..((((((((((....))------))-----.)---)-)))).... ( -35.70)
>consensus
GGAUAUGACAAUGGAGGAGCUGGACCAGACGGCCGGCACCAGCCAGGGUGGCGAAGGAUCUAGUCAAAGUGAGUUUCCACUAGA_____AUA_____UA___C_UUAUAUAC
.....((((..((((((.(((((.((....))))))).)).(((.....)))......)))))))).............................................. (-22.31 = -22.25 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:49 2006