Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,041,570 – 6,041,671 |
Length | 101 |
Max. P | 0.956010 |
Location | 6,041,570 – 6,041,671 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.69 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -21.40 |
Energy contribution | -20.52 |
Covariance contribution | -0.89 |
Combinations/Pair | 1.32 |
Mean z-score | -2.57 |
Structure conservation index | 0.71 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6041570 101 - 20766785 ---GGUGCGUGCCCAGGUGAGUAUGCUCCGCCCAACGGUAUCGGUUGGGCGAAGUGAAAUACAAGAAUGAAGUAAAUUUA-UUAUUUUAAGUUCA-UUUUUGUUUG ---((.((((((.(....).)))))).))(((((((.......)))))))..........(((((((((((.((((....-....))))..))))-)))))))... ( -34.40) >DroPse_CAF1 58954 101 - 1 ---GGUAUC-CCCCAGGUAAGUAUGCUUCGCUCAACGGUAUCGGUUGGGCGAAGUGACAUGCAAAAAUGAAAUAAAUUUUUGUAUUUUAAGUUGA-UUUUCGUUCA ---((....-..))......((.(((((((((((((.......)))))))))))))))((((((((((.......))))))))))..........-.......... ( -26.90) >DroGri_CAF1 69683 104 - 1 UUGCGUAAGUGGUCAGGUAAGUAUGCUUCGCCCGACGGUAUCGGUUGGGCGAAGUGCGC-AC-AAAAUGAAAUAAAUUUUGAAAUUUUAAGUUCAGUUUUUGUUUU (..(....)..)........((..((((((((((((.......))))))))))))..))-..-.....((((((((..(((((........)))))..)))))))) ( -33.80) >DroMoj_CAF1 74925 103 - 1 AUACGCUUGGGUCCAGGUAAGUAUGCUUCGCUUGACGGUAUCGGUUGAGCGAAGUGCCA-AG-AAAAUGAAGUAAAUUUUGAUAUUUUAAGUUCG-UUUUUGUUUC (((((((((....)))))..))))((((((((..((.......))..))))))))....-.(-((((((((.((((.........))))..))))-)))))..... ( -29.20) >DroAna_CAF1 62501 97 - 1 ---GGUGU---UUCAGGUGAGUAUGCUCCGCUCGACGGUAUCGGUUGGGCGGAGUGCCGCACAA-AAUGAAGUAAAUUUU-GUAUUUUAAGUUCA-UUUUUGUUUG ---(((..---(((....)))...((((((((((((.......)))))))))))))))(((.((-((((((.((((....-....))))..))))-)))))))... ( -30.60) >DroPer_CAF1 58698 101 - 1 ---GGUAUC-CCCCAGGUAAGUAUGCUUCGCUCAACGGUAUCGGUUGGGCGAAGUGACAUGCAAAAAUGAAAUAAAUUUUUGUAUUUUAAGUUGA-UUUUCGUUCA ---((....-..))......((.(((((((((((((.......)))))))))))))))((((((((((.......))))))))))..........-.......... ( -26.90) >consensus ___GGUAUG_GCCCAGGUAAGUAUGCUUCGCUCAACGGUAUCGGUUGGGCGAAGUGACAUACAAAAAUGAAAUAAAUUUU_GUAUUUUAAGUUCA_UUUUUGUUUA ........................((((((((((((.......))))))))))))............(((((((........)))))))................. (-21.40 = -20.52 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:49 2006