| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,034,676 – 6,034,784 |
| Length | 108 |
| Max. P | 0.723048 |
| Location | 6,034,676 – 6,034,784 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.64 |
| Mean single sequence MFE | -39.33 |
| Consensus MFE | -27.26 |
| Energy contribution | -30.85 |
| Covariance contribution | 3.59 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.723048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6034676 108 + 20766785 UUUGCUGUGCUG------CUGGCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGUCCUUAAAUCU ...(((.(((((------.((((.((((((.(.(((...((((((.....)))))).)))).)))))).))))....(((....)))......))))).)))............ ( -42.70) >DroSec_CAF1 52887 105 + 1 UUUGCUGUG---------CUGGCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGUCCUUAAAUCU (((((((((---------.((((.((((((.(.(((...((((((.....)))))).)))).)))))).))))....(((....)))....))))))))).............. ( -41.80) >DroSim_CAF1 53000 105 + 1 UUUGUUGUG---------CUGGCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGNNNNNNNNNNN ...(((.((---------(((((.((((((.(.(((...((((((.....)))))).)))).)))))).))......(((....)))......))))).)))............ ( -39.10) >DroEre_CAF1 53276 114 + 1 UUUGCUGUGCUGCUGGUGGUUGAUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGUCCUUAAAUCU ((((((((((..(.((..((((..((((((.(.(((...((((((.....)))))).)))).)))))).....))))..)))..))......)))))))).............. ( -45.50) >DroYak_CAF1 52393 105 + 1 UUUGCUGUG---------GUGGCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUCGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGUCCUUAAAUCU (((((((((---------(((((.(((((..(.(((...((((((.....)))))).))))..))))).)))))...(((....)))....))))))))).............. ( -41.60) >DroAna_CAF1 55311 85 + 1 -----------------------------CUGGUCCACUGGUGGCUUCUUGCUGGCCGCACUGGCCGCCGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGUCCUUAAAUCU -----------------------------..((.((((((((((((.......))))))....(((((.((.......)).))))).......))))...).).))........ ( -25.30) >consensus UUUGCUGUG_________CUGGCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCGUCCUUAAAUCU (((((((((..........((((.((((((.(.(((...((((((.....)))))).)))).)))))).))))....(((....)))....))))))))).............. (-27.26 = -30.85 + 3.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:47 2006