Locus 1604

Sequence ID 2R_DroMel_CAF1
Location 6,007,068 – 6,007,173
Length 105
Max. P 0.547023
window2687

overview

Window 7

Location 6,007,068 – 6,007,173
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 93.00
Mean single sequence MFE -20.93
Consensus MFE -17.74
Energy contribution -17.52
Covariance contribution -0.22
Combinations/Pair 1.09
Mean z-score -1.56
Structure conservation index 0.85
SVM decision value 0.03
SVM RNA-class probability 0.547023
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6007068 105 - 20766785
CACACAUAGCG--GGGCGCAUACCAUAAUUUGUUGUCAGUUUUAAAGUUUGUGCCACACAAAAAAUGUGAUAAAGAAGAAAAUUA-ACAACAGACAACAAAUUGGCAC
........(((--(........)).((((((((((((.(((((((..(((......((((.....))))........)))..)))-).))).)))))))))))))).. ( -22.34)
>DroSec_CAF1 25650 106 - 1
CACACAUAGCG--GGGCGCAUACCAUAAUUUGUUGUCAGUUUUAAAGUUUGUGCCACACAAAAAAUGUGAUAAAGAAGUAAAUUAAACAACAGACAACAAAUUGGCAC
........(((--(........)).((((((((((((..........((((((...))))))...(((..................)))...)))))))))))))).. ( -21.27)
>DroSim_CAF1 25880 106 - 1
CACACAUAGCG--GGGCGCAUACCAUAAUUUGUUGUCAGUUUUAAAGUUUGUGCCACACAAAAAAUGUGAUAAAGAAGUAAAUUAAACAACAGACAACAAAUUGGCAC
........(((--(........)).((((((((((((..........((((((...))))))...(((..................)))...)))))))))))))).. ( -21.27)
>DroEre_CAF1 25523 106 - 1
AACACAUAGAG--GGGCGCAUACCAUAAUUUGUUGUCAGUUUUAAAGUUUGUGCCACACAAAAAAUGUGAUAAAGAAGUAAAUUAAACAACAGGCAACAAAUUGGCAC
..........(--(........)).((((((((((((..........((((((...))))))...(((..................)))...)))))))))))).... ( -18.17)
>DroYak_CAF1 25363 108 - 1
AUCACUUAGAGGGGGGCGCAUACCAUAAUUUGUUGUCAGUUUUAAAGUUUGUGCCACACAAAAAAUGUGAUAAAGAAGUAAAUUAAAAAACAGGCAACAAAUUGGCAC
............((........)).((((((((((((.(((((..((((((.....((((.....)))).........))))))..))))).)))))))))))).... ( -19.84)
>DroAna_CAF1 25789 106 - 1
AACACAUAAUG--GGGCGCAUACCGUUGUUUGUUGUCAGUUUUCAAGUUUGUGCCACACAAAAAAUGUGAUAAAAAAAAUAUUUAAACAACAGGCAACAAAUUGGCAC
((((.((((((--(........))))))).))))((((((((....((((((....((((.....)))).((((.......))))....))))))...)))))))).. ( -22.70)
>consensus
AACACAUAGCG__GGGCGCAUACCAUAAUUUGUUGUCAGUUUUAAAGUUUGUGCCACACAAAAAAUGUGAUAAAGAAGUAAAUUAAACAACAGACAACAAAUUGGCAC
.............((.......)).((((((((((((..........((((((...))))))...(((.....................))))))))))))))).... (-17.74 = -17.52 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:38 2006