Locus 1603

Sequence ID 2R_DroMel_CAF1
Location 6,003,996 – 6,004,116
Length 120
Max. P 0.661203
window2686

overview

Window 6

Location 6,003,996 – 6,004,116
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.72
Mean single sequence MFE -41.52
Consensus MFE -30.14
Energy contribution -29.65
Covariance contribution -0.49
Combinations/Pair 1.43
Mean z-score -2.10
Structure conservation index 0.73
SVM decision value 0.27
SVM RNA-class probability 0.661203
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6003996 120 - 20766785
UGCGCAAGUACUGCCUCAAGCAGAAGAAGUACAAGUGCGUGUCGUGCGAAUAUCGAUCCCGACGCAAGGAUCAUGUCCUGCGGCACGCAAAACGCAAGCAUUGCAUGCUCUACGAGCAGU
.((((..(((((.(.((.....)).).)))))..))))((((((((.((.(((.(((((........)))))))))).))))))))((((..(....)..)))).(((((...))))).. ( -41.40)
>DroVir_CAF1 24847 120 - 1
UGCGCAAAUAUUGCCUGAAGCAAAAGAAAUACAAGUGCGUAUCCUGCGAGUAUCGUUCGCGUCGCAAGGAUCAUGUGCUGCGGCAUGCAAAGCGCAAGCACUGCAUGCUCUAUGAGCGGC
.((((.....((((.....))))..........((..((((((((((((((.......)).)))).))))).)))..))))((((((((..((....))..))))))))......))... ( -43.00)
>DroGri_CAF1 23845 120 - 1
UGCGCAAAUACUGCCUGAAGCAGAAGAAAUACAAGUGCGUGUCCUGUGAGUAUCGUUCGCGCCGCAAGGAUCAUGUGCUGCGACAUGCAAAGCGCAAGCAUUGCAUGCUCUAUGAGCGUC
.((((.....((((.....))))........((((..(((((((((((.((.......))..))).)))).))))..))..(((((((((.((....)).))))))).))..)).)))). ( -42.70)
>DroWil_CAF1 23592 120 - 1
UUCGUAAAUAUUGUUUGAAACAAAAGAAAUAUAAAUGCGUAUCCUGUGAAUAUCGUUCACGACGCAAGGAUCAUGUCUUGCGUCAUGCCAAACGUAAACAUUGUCUACUCUAUGAGAGGG
((((((.(((((.((((...))))...)))))...(((((.....((((((...))))))(((((((((......))))))))).......)))))..............)))))).... ( -27.40)
>DroMoj_CAF1 26437 120 - 1
UGCGCAAAUACUGCCUGAAGCAGAAGAAAUACAAGUGCGUGUCCUGCGAAUAUCGUUCGCGGCGCAAGGAUCAUGUGCUGCGGCAUGCGAAGCGUAAGCAUUGCAUGCUCUACGAGCGAC
..((((....((((.....)))).....((((......))))..))))....((((((((((((((.......))))))))(((((((((.((....)).)))))))))....)))))). ( -48.60)
>DroAna_CAF1 22389 120 - 1
UGCGGAAGUACUGUCUCAAGCAGAAGAAGUACAAGUGCGUGUCCUGCGAGUACCGCUCCCGGCGCAAGGACCACGUCCUGCGGCACGCCAAGCGCAAGCACUGCAUGCUGUACGAGCAGU
(((((..(((((.(((.....)))...)))))..(.((((((((((.(((.....))).))).(((.((((...)))))))))))))))..((....)).))))).(((((....))))) ( -46.00)
>consensus
UGCGCAAAUACUGCCUGAAGCAGAAGAAAUACAAGUGCGUGUCCUGCGAAUAUCGUUCGCGACGCAAGGAUCAUGUCCUGCGGCAUGCAAAGCGCAAGCAUUGCAUGCUCUACGAGCGGC
(((((.....((((.....))))..........((..(((((((((((....(((....)))))).))))).)))..))))((((.((((.((....)).)))).))))......))).. (-30.14 = -29.65 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:37 2006