Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,999,913 – 6,000,020 |
Length | 107 |
Max. P | 0.582889 |
Location | 5,999,913 – 6,000,020 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.85 |
Mean single sequence MFE | -45.71 |
Consensus MFE | -18.51 |
Energy contribution | -19.48 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.36 |
Mean z-score | -1.99 |
Structure conservation index | 0.40 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5999913 107 + 20766785 CCGCGGAAGCUUCCGUCCAGGAACCAGGGCACUGUUGUCUAUAUUG----------CUCAUGUUCUGGACGAGAUGCUGCAGCGAUCUAGCUGUGGAAAUGGAGGCCAGUUGCUGCA ..((((..((((((((((((((....(((((.(((.....))).))----------)))...))))))))......(..((((......))))..)....))))))......)))). ( -44.30) >DroVir_CAF1 19115 116 + 1 UCGUGGCAGCUUGCGUCCGGCGACCAGGCUGCUGGUAUCGAUGU-GCAAAUUGUGUGGCAAAUGCGGCACCAGAUGCUGCAGCGAGCGGGCUGUUGAAAUGGAGGCCAGUUGCUGCA ..(..((((((.((.((((.((((.((.(((((.((.....(((-(((..(.((((.((....)).)))).)..))).))))).))))).))))))...)))).)).))))))..). ( -53.70) >DroGri_CAF1 18567 116 + 1 ACGUGGCAGCUUGCGUCCAGCCAAAAGGGUGCUGGUGUCAAUGU-GUAAAUUCUGUGGCAAAUGCGGCACUAGAUGCUGCAGUGAGCGAGCCGUCGAUAUGGAUGCCAAUUGCUGCA ..(..((((...(((((((.......((.((((.((((((..((-....))....)))))..(((((((.....))))))).).))))..)).......)))))))...))))..). ( -40.04) >DroEre_CAF1 18173 107 + 1 ACGCGGCAGCUUUCGGCCCGGAACCAGGGCACUGUUGUCUAUGUUG----------CUCAUGUUCUGGACGAGAUGCUGCAGCGAUCGGGCAGUGGAAAUGGAGGCCAGUUGCUGCA .(((.((((((((((..(((((((..(((((..((.....))..))----------)))..))))))).))))).))))).))).....((((..(...(((...))).)..)))). ( -47.60) >DroYak_CAF1 18183 107 + 1 GCGAGGAAGCUUCCGUCCAGGAACCAGGGCACUGUUGUCUAUGUUA----------CUCAUGUUCUGGACGAGAUGCUGCAGCGAUCUAGCCGUGGAAAUGGAGGCCAGUUGCUGCA .......(((.(((((((((((....(((((....)))))(((...----------..))).))))))))).)).)))((((((((....((((....))))......)))))))). ( -39.90) >DroMoj_CAF1 20517 116 + 1 GCGGGGCAACUUGCGACCCGCUACGAGGCUGCUGGUGUCAAUGU-GCAGGUUCUGUGGCAGGUGCGGCACCAGGUGCUGCAGCGAACGAGCCGUCGAUAUGGAGGCCAAUUGCUGUA (((((....))))).(((.((((((((.((((..((....))..-)))).))).))))).)))(((((((...)))))))(((((..(.(((.((......))))))..)))))... ( -48.70) >consensus ACGCGGCAGCUUGCGUCCAGCAACCAGGGCACUGGUGUCUAUGU_G__________CGCAUGUGCGGCACGAGAUGCUGCAGCGAUCGAGCCGUGGAAAUGGAGGCCAGUUGCUGCA ..(((((((((..(.((((....(((.(((...........................((.......))......(((....))).....))).)))...)))).)..))))))))). (-18.51 = -19.48 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006