Locus 1601

Sequence ID 2R_DroMel_CAF1
Location 5,995,637 – 5,995,756
Length 119
Max. P 0.898711
window2684

overview

Window 4

Location 5,995,637 – 5,995,756
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 87.96
Mean single sequence MFE -40.92
Consensus MFE -36.33
Energy contribution -36.72
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 0.89
SVM decision value 1.00
SVM RNA-class probability 0.898711
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5995637 119 - 20766785
CAAAAAACUUGAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCAAGGCCCAAAUACACCCUGAAG
..............(((((((((((((.(((.((......(((((((((...)).)))))))((((((......))))))))))).))))))))))...)))................. ( -41.10)
>DroSec_CAF1 14010 119 - 1
CAAAAAACUUGAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUACACCCUGAAG
..............(((((((((((((.(((.((......(((((((((...)).)))))))((((((......))))))))))).))))))))))...)))................. ( -41.10)
>DroSim_CAF1 14488 119 - 1
CAAAAAACUUGAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUACACCCUGAAG
..............(((((((((((((.(((.((......(((((((((...)).)))))))((((((......))))))))))).))))))))))...)))................. ( -41.10)
>DroEre_CAF1 14040 119 - 1
CAAAAAACUCGAAUGCUGAUGAAGUGAUGCGGGUUCAGAACGCCACAGCUACGCAUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUUCACACUGAAG
..........(((((((((((((((((.((((........(((((((((...)).)))))))((((((......)))))).)))).))))))))))...)))....))))......... ( -45.50)
>DroYak_CAF1 14132 119 - 1
CAAAAAACUUGAAUGCUGAUGAAGUGAUGCGGGUUCAGAACGCCACAGCUACGCAUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUUCACCCUGAAG
.........((((((((((((((((((.((((........(((((((((...)).)))))))((((((......)))))).)))).))))))))))...)))....)))))........ ( -45.80)
>DroAna_CAF1 14257 95 - 1
CAAAAAACUUGAAUGCUGAUGAAAUGAUGCGGACACA------------------------GGGUGCAGCCGCUGGCACCGCCGCCUCAUUUCAUCCAAGGCUCAAAUACCCGAUGAAC
........((((..(((((((((((((.((((.....------------------------.(((((........))))).)))).))))))))))...)))))))............. ( -30.90)
>consensus
CAAAAAACUUGAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUACACCCUGAAG
..............(((((((((((((.(((.........(((((((((...)).)))))))((((((......))))))..))).))))))))))...)))................. (-36.33 = -36.72 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:35 2006