Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,993,138 – 5,993,231 |
Length | 93 |
Max. P | 0.801641 |
Location | 5,993,138 – 5,993,231 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -15.75 |
Energy contribution | -15.67 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -1.28 |
Structure conservation index | 0.69 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5993138 93 - 20766785 CUUCACCAGGAAGUUUAUGAAUUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCCA-ACAAGUUU-GGUAAUUAGUGUAAAAGG----CCAUA .((((((.(((.......(....)((((...........)))).))).))))))((((((((-(.....))-))).............))----))... ( -24.41) >DroSec_CAF1 11529 92 - 1 CUUCACCAGGAAGUUGAUGAAUUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCGA-ACAAAUUU-GGUAAUUAGUGUAA-AGG----CCAUA .((((((.(((....((.....))((((...........)))).))).))))))((((....-((.((((.-...)))).))....-.))----))... ( -25.70) >DroSim_CAF1 12007 92 - 1 CUUCACCAGGAAGUUGAUGAACUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCGA-ACAAGUUU-GGUAAUUAGUGUAA-AGG----CCAUA .((((((.(((((((....)))).((((...........)))).))).))))))((((....-((.((((.-...)))).))....-.))----))... ( -26.30) >DroEre_CAF1 11544 88 - 1 CUUCACCAGAAAGUUGAUGAACUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCAAAACAAGUGU-GAUAAUUA----------UUAUCCAUA ((((((((((.((((....)))).((((...........)))).))).)))))))............(((.-((((....----------.))))))). ( -23.90) >DroMoj_CAF1 12430 84 - 1 CUUCACCAGGAAGUUUAUAAAUUCCGGCGUAAAGCGAAAGCCCAUUUGUGUGAAUGCUGUAA---AAGAAA-CAUAUUAC-------AU----GACAUG ..((((((((((.........))))........((....)).....)).))))(((((((((---.(....-..).))))-------).----).))). ( -14.00) >DroPer_CAF1 9626 88 - 1 CUUCACCAGAAAGUUGAUGAAUUCCGGCGAAAACCGAAAGCCCAUCUGAGUGAAGGCUGUGG-GCAAGGAAAAGCCAUUA----------GUAACCAUC ((((((((((..((((........))))......(....)....)))).))))))((((..(-((........)))..))----------))....... ( -22.60) >consensus CUUCACCAGGAAGUUGAUGAAUUCGGGCGAGAAUCGAAAGCCCAUCUGGGUGAAGGCUGCGA_ACAAGUUU_GGUAAUUA_______AG_____CCAUA ((((((((((.((((....)))).((((...........)))).)))).))))))............................................ (-15.75 = -15.67 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:34 2006