Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,422,631 – 1,423,023 |
Length | 392 |
Max. P | 0.999960 |
Location | 1,422,631 – 1,422,743 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.54 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -23.08 |
Energy contribution | -23.20 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.56 |
Structure conservation index | 0.80 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422631 112 + 20766785 --------UCCUUUGCCGUGGUCGUCGGUGAGUUUAAAAUGCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCC --------......((((.......))))((((((((.(((.((((((((.....))))))))))).))))))))((((....((((((.(.....((....))).))))))....)))) ( -29.60) >DroSec_CAF1 41084 112 + 1 --------UCCUUUGCCGUGGUCGUCGGUGAGUUUAAAAUGCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAUCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCC --------......((((.......))))((((((((.(((.((((((((.....))))))))))).))))))))((((...(((((((.(.....((....))).)))))))...)))) ( -30.50) >DroSim_CAF1 46135 112 + 1 --------UCCUUUGCCGUGGUCGUCGGUGAGUUUAAAAUGCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAUCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCC --------......((((.......))))((((((((.(((.((((((((.....))))))))))).))))))))((((...(((((((.(.....((....))).)))))))...)))) ( -30.50) >DroEre_CAF1 39289 97 + 1 -----------------------GUUGGUGAAUCUAAAAUGCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCGGGCAACUGGAUUAUGAAAAGCCC -----------------------......((..((((.(((.((((((((.....))))))))))).))))..))(((((((......)))(((((((....))))))).......)))) ( -26.80) >DroYak_CAF1 40442 120 + 1 AUGGUAUCUCCAUUGCCGUGGUCGUCGCUUACUUUAAAAUGCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCC ((((((.......))))))(((..(((((((.(((((.(((.((((((((.....))))))))))).)))))..)))))..........(((((..((....))..)))))))...))). ( -27.70) >consensus ________UCCUUUGCCGUGGUCGUCGGUGAGUUUAAAAUGCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCC .............................((((((((.(((.((((((((.....))))))))))).))))))))((((....((((((.(.....((....))).))))))....)))) (-23.08 = -23.20 + 0.12)
Location | 1,422,663 – 1,422,783 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -33.72 |
Energy contribution | -32.92 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.16 |
Mean z-score | -3.19 |
Structure conservation index | 0.98 |
SVM decision value | 4.89 |
SVM RNA-class probability | 0.999960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422663 120 + 20766785 GCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCCUCGCCUAGGGUUAAUUAACAUGACUAAUGCACUGGAAAUA ((((((((((.....)))))))..(((((((((..((((....((((((.(.....((....))).))))))....))))..)))))))))................))).......... ( -33.40) >DroSec_CAF1 41116 120 + 1 GCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAUCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCCUCGCCUAGGGUUAAUUAACAUGACUAAUGCACUGGAAAUA ((((((((((.....)))))))..(((((((((..((((...(((((((.(.....((....))).)))))))...))))..)))))))))................))).......... ( -34.30) >DroSim_CAF1 46167 120 + 1 GCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAUCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCCUCGCCUAGGGUUAAUUAACAUGACUAAUGCACUGGAAAUA ((((((((((.....)))))))..(((((((((..((((...(((((((.(.....((....))).)))))))...))))..)))))))))................))).......... ( -34.30) >DroEre_CAF1 39306 120 + 1 GCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCGGGCAACUGGAUUAUGAAAAGCCCUCGCCCAGGGUUAAUUAACAUGACUAAUGCACUGGAAAUA ((((((((((.....)))))))..(((((((((..(((((((......)))(((((((....))))))).......))))..)))))))))................))).......... ( -39.80) >DroYak_CAF1 40482 120 + 1 GCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCCUCGCUUAAGGUUAAUUAUCAUGACUAAUGCACUGGAAAUA ((((((((((.....)))))))..(((((((((..((((....((((((.(.....((....))).))))))....))))..)))))))))................))).......... ( -30.90) >consensus GCAGUUAAAUAAUAGAUUUAACUCAUCUUGGGCUUGGGCACAGCGUAAUGUAAUUCAGGCAACUAGAUUAUGAAAAGCCCUCGCCUAGGGUUAAUUAACAUGACUAAUGCACUGGAAAUA ((((((((((.....)))))))..(((((((((..((((....((((((.(.....((....))).))))))....))))..)))))))))................))).......... (-33.72 = -32.92 + -0.80)
Location | 1,422,783 – 1,422,903 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -43.66 |
Consensus MFE | -34.86 |
Energy contribution | -35.54 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.03 |
Mean z-score | -2.34 |
Structure conservation index | 0.80 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422783 120 + 20766785 GCUGACACACUGCGGGCACUAAUCAGUCCUGGUCUUUCGCACUAGCGGCCAAGUAAGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAA ..((((...(....)((((.(((((((((((....(((((....))((((......)))).)))(((.((((......)))).))).......))))))...)))))))))..))))... ( -40.50) >DroSec_CAF1 41236 120 + 1 GCUGACACACUGCGGGCACUAAUCAGUCCUGGGCCUUCGCACUAGCGGCCAAGUUGGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAA ..((((...(....)((((.((((((((((((((((((((....)))).......)))))....(((.((((......)))).))).......))))))...)))))))))..))))... ( -42.01) >DroSim_CAF1 46287 120 + 1 GCUGACACACUGCGGGCACUAAUCAGUCCCGGGCCUUCGCACUAGCGGCCAAGUUGGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAA ..((((......((((.(((....))))))).....((((((..(((((...((((((((....))))))))......)))((.(((......))).))..))....))))))))))... ( -41.30) >DroEre_CAF1 39426 119 + 1 ACUGACACACUGCGGGCACUAAUCAGUCCUGGACCUUCGCACUA-CGGCCAAGCCGGGCUUGAAAGCUCGGCAAUUAGGCCGGGCUGAUAAAGCGGGACAAGUGAUUGUGCGAGUCAUAA ..((((...(....)((((.(((((((((((.....((((....-(((((..((((((((....)))))))).....))))).)).)).....))))))...)))))))))..))))... ( -46.50) >DroYak_CAF1 40602 120 + 1 GCUGACACACUGCGGGCACAAAUCAGUCCUGGGCCUUCGCACUAGCGGCCAUAGUGGUCUUGAAAGCUCGGCAAUUAAGCCGGGCUGAUAAAACAGCACAAGUGAUUGUGCGAGUCAUAA ..((((.(((((((((.((......))))))((((...((....)))))).)))))((.(((..((((((((......))))))))..))).)).((((((....))))))..))))... ( -48.00) >consensus GCUGACACACUGCGGGCACUAAUCAGUCCUGGGCCUUCGCACUAGCGGCCAAGUUGGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAA ..((((...(....)((((.(((((((((((....(((((....))((((......)))).)))(((.((((......)))).))).......))))))...)))))))))..))))... (-34.86 = -35.54 + 0.68)
Location | 1,422,783 – 1,422,903 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -40.02 |
Consensus MFE | -33.76 |
Energy contribution | -34.36 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.84 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422783 120 - 20766785 UUAUGACUCGCACAAUCACUUGUCCUGUUUUAUCAGCACGGCUUAAUUGCCGAGCUUUCAAGCCUUACUUGGCCGCUAGUGCGAAAGACCAGGACUGAUUAGUGCCCGCAGUGUGUCAGC ...((((.(((..(((((...((((((.(((.((.(((((((......))).(((..(((((.....)))))..))).)))))).))).))))))))))).((....)).))).)))).. ( -41.00) >DroSec_CAF1 41236 120 - 1 UUAUGACUCGCACAAUCACUUGUCCUGUUUUAUCAGCACGGCUUAAUUGCCGAGCUUUCAAGCCCAACUUGGCCGCUAGUGCGAAGGCCCAGGACUGAUUAGUGCCCGCAGUGUGUCAGC ...((((.(((..(((((...((((((...........((((......)))).((((((..(((......))).((....)))))))).))))))))))).((....)).))).)))).. ( -40.50) >DroSim_CAF1 46287 120 - 1 UUAUGACUCGCACAAUCACUUGUCCUGUUUUAUCAGCACGGCUUAAUUGCCGAGCUUUCAAGCCCAACUUGGCCGCUAGUGCGAAGGCCCGGGACUGAUUAGUGCCCGCAGUGUGUCAGC ...((((.(((..(((((...((((((...........((((......)))).((((((..(((......))).((....)))))))).))))))))))).((....)).))).)))).. ( -39.80) >DroEre_CAF1 39426 119 - 1 UUAUGACUCGCACAAUCACUUGUCCCGCUUUAUCAGCCCGGCCUAAUUGCCGAGCUUUCAAGCCCGGCUUGGCCG-UAGUGCGAAGGUCCAGGACUGAUUAGUGCCCGCAGUGUGUCAGU ...((((.(((((((....))))..((((..((((((((((((.....((((.(((....))).))))..)))))-..(..(....)..).)).))))).))))......))).)))).. ( -41.90) >DroYak_CAF1 40602 120 - 1 UUAUGACUCGCACAAUCACUUGUGCUGUUUUAUCAGCCCGGCUUAAUUGCCGAGCUUUCAAGACCACUAUGGCCGCUAGUGCGAAGGCCCAGGACUGAUUUGUGCCCGCAGUGUGUCAGC ...((((.(((((((....)))))).((...(((((((((((......)))).((((((..(.((.....)).)((....))))))))...)).)))))....)).......).)))).. ( -36.90) >consensus UUAUGACUCGCACAAUCACUUGUCCUGUUUUAUCAGCACGGCUUAAUUGCCGAGCUUUCAAGCCCAACUUGGCCGCUAGUGCGAAGGCCCAGGACUGAUUAGUGCCCGCAGUGUGUCAGC ...((((.(((..(((((...((((((...........((((......)))).((((((..(((......))).((....)))))))).))))))))))).((....)).))).)))).. (-33.76 = -34.36 + 0.60)
Location | 1,422,823 – 1,422,943 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -40.17 |
Consensus MFE | -28.18 |
Energy contribution | -29.36 |
Covariance contribution | 1.18 |
Combinations/Pair | 1.16 |
Mean z-score | -2.53 |
Structure conservation index | 0.70 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422823 120 + 20766785 ACUAGCGGCCAAGUAAGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGACAACAUGAGGGUGACGCC ....((((((......)))......(((((((......)))(((((.........(.((((....)))).)((((....))))...))))).((....))..........))))..))). ( -33.40) >DroSec_CAF1 41276 120 + 1 ACUAGCGGCCAAGUUGGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCC ....((((((..((((((((....)))))))).......(((((.((........(.((((....)))).)((((....)))).....)))))))....))))........(....))). ( -39.70) >DroSim_CAF1 46327 120 + 1 ACUAGCGGCCAAGUUGGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCC ....((((((..((((((((....)))))))).......(((((.((........(.((((....)))).)((((....)))).....)))))))....))))........(....))). ( -39.70) >DroEre_CAF1 39466 119 + 1 ACUA-CGGCCAAGCCGGGCUUGAAAGCUCGGCAAUUAGGCCGGGCUGAUAAAGCGGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGAACACGGAUACGGCCAACAUGGGGGUGACGCC ....-.((((...(((.((((...((((((((......))))))))....)))).(.((((....)))).)((((....)))).........)))....)))).....((.(....).)) ( -46.30) >DroYak_CAF1 40642 120 + 1 ACUAGCGGCCAUAGUGGUCUUGAAAGCUCGGCAAUUAAGCCGGGCUGAUAAAACAGCACAAGUGAUUGUGCGAGUCAUAACUUAAAAGAACACGGAUACGUGCAAUACGAGGGUGACGCU ...(((((((.....))))(((..((((((((......))))))))..)))....((((((....))))))..(((((..(((.......((((....)))).......))))))))))) ( -41.74) >consensus ACUAGCGGCCAAGUUGGGCUUGAAAGCUCGGCAAUUAAGCCGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCC ......((((((((...)))))..(((.((((......)))).))).........(.((((....)))).)..(((((..((((........((....)).......)))).)))))))) (-28.18 = -29.36 + 1.18)
Location | 1,422,863 – 1,422,983 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -42.06 |
Consensus MFE | -31.24 |
Energy contribution | -31.68 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.93 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559164 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422863 120 + 20766785 CGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGACAACAUGAGGGUGACGCCCGUGCGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCG .(((((.........(.((((....)))).)((((....))))...))))).((....))...........(....)(((((((((...((((.((.....)).)))).)))).))))). ( -41.50) >DroSec_CAF1 41316 120 + 1 CGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCG .(((((.........(.((((....)))).)((((....))))...))))).((....))(((........)))..(((((((.(((..((((.((.....)).))))..)))))))))) ( -43.20) >DroSim_CAF1 46367 120 + 1 CGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCG .(((((.........(.((((....)))).)((((....))))...))))).((....))(((........)))..(((((((.(((..((((.((.....)).))))..)))))))))) ( -43.20) >DroEre_CAF1 39505 120 + 1 CGGGCUGAUAAAGCGGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGAACACGGAUACGGCCAACAUGGGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGAGUGACGCAGCGGGCG ..(((((........(.((((....)))).)((((....))))...............))))).((((((((....).)))))))(((((..((((((((...))))))))..).)))). ( -44.80) >DroYak_CAF1 40682 120 + 1 CGGGCUGAUAAAACAGCACAAGUGAUUGUGCGAGUCAUAACUUAAAAGAACACGGAUACGUGCAAUACGAGGGUGACGCUCGUGUGUUCCAUCGACAUUCAGAGAAUGACGCAGCGGGCG ...((((........((((((....))))))..(((((.........(((((((....)))...((((((((....).)))))))))))..((........))..))))).))))..... ( -37.60) >consensus CGUGCUGAUAAAACAGGACAAGUGAUUGUGCGAGUCAUAACUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCG (((((.(((...((.......)).)))))))).(((((..((((........((....)).......)))).)))))((((((.(((..((((.((.....)).))))..))))))))). (-31.24 = -31.68 + 0.44)
Location | 1,422,903 – 1,423,023 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -39.04 |
Consensus MFE | -28.74 |
Energy contribution | -29.58 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.21 |
Mean z-score | -1.94 |
Structure conservation index | 0.74 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1422903 120 + 20766785 CUCAAAAGCACACGGAUACGGACAACAUGAGGGUGACGCCCGUGCGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCGGCAAAAAAAAACCAAUGAACGAGUGUUGGGAUAAGCUCAA ((((...((((.((....)).....(((...(((..((((((((((...((((.((.....)).)))).)))).))))))..........))).))).....)))))))).......... ( -35.90) >DroSec_CAF1 41356 120 + 1 CUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCGACAGAAAAAAGCCAAUGAACGAGUGUUGGGAUAAGCUCAA ......(((...((....)).(((((((..((....)((((((.(((..((((.((.....)).))))..)))))))))....................)..))))))).....)))... ( -38.90) >DroSim_CAF1 46407 120 + 1 CUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCGGCAGAAAAAAGCCAAUGAACGAGUGUUGGGAUAAGCUCAA ......(((...((....)).(((((((..((....)((((((.(((..((((.((.....)).))))..)))))))))(((........)))......)..))))))).....)))... ( -43.10) >DroEre_CAF1 39545 119 + 1 CUCAAAAGAACACGGAUACGGCCAACAUGGGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGAGUGACGCAGCGGGCGGCAAAA-AAAGCCAAUGGACGAGUGUUGGGAUAAGCUCAA (((((....((.((..((..(((.((((((((....).)))))))(((....((((((((...)))))))).))).)))(((....-...)))..))..)).)).))))).......... ( -41.50) >DroYak_CAF1 40722 119 + 1 CUUAAAAGAACACGGAUACGUGCAAUACGAGGGUGACGCUCGUGUGUUCCAUCGACAUUCAGAGAAUGACGCAGCGGGCGGCAAAAAAAAGCCAUUGGUUGAGUGU-GGGAUAAGCUCAA ..........((((....))))..((((((((....).)))))))(((((((...(((((...)))))((.((((.((.(((........))).)).)))).))))-)))))........ ( -35.80) >consensus CUCAAAAGCACACGGAUACGGCCAACAUGAGGGUGACGCCCGUGUGCUCCAUCGUCAUUCAGAGGAUGACGCAGCGGGCGGCAAAAAAAAGCCAAUGAACGAGUGUUGGGAUAAGCUCAA ............((....)).(((((((..(......((((((.(((..((((.((.....)).))))..)))))))))(((........)))......)..)))))))........... (-28.74 = -29.58 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:34 2006